Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.9e-115 418.7 230 100.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.5e-47 193.7 247 49.4
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 3.6e-41 172.6 238 44.1
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 5.4e-37 158.7 235 46.4
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.3e-30 137.5 233 42.1
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.1e-28 130.2 228 39.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 5.1e-27 125.6 226 37.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.5e-26 123.2 252 37.3
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.3e-26 122.9 225 36.0
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.6e-26 122.1 225 37.8
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.6e-26 122.1 225 37.8
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 5.6e-26 122.1 232 38.4
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.3e-26 121.7 228 37.7
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.8e-25 119.8 241 34.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.1e-24 117.9 233 37.3
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.1e-24 117.9 227 38.8
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 3.1e-24 116.3 237 37.1
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 4.0e-24 115.9 229 36.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 5.3e-24 115.5 225 36.0
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 6.9e-24 115.2 228 38.6
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.0e-24 114.8 230 38.7
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.5e-23 114.0 232 34.1
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-23 113.6 234 40.2
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.0e-23 113.6 238 34.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 4.4e-23 112.5 223 37.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 5.8e-23 112.1 235 36.6
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 5.8e-23 112.1 237 35.4
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 5.8e-23 112.1 237 35.4
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.3e-22 110.9 236 36.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-22 110.9 230 33.9
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.3e-22 110.9 229 36.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 3.8e-22 109.4 226 35.0
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 4.9e-22 109.0 230 37.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.1e-21 107.8 232 32.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-21 107.5 226 34.1
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.4e-21 106.7 227 35.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.4e-21 106.7 236 35.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.2e-21 106.3 224 32.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.2e-21 106.3 234 35.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.2e-21 105.9 239 32.2
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 7.1e-21 105.1 237 37.1
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 7.1e-21 105.1 248 33.5
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.3e-21 104.8 238 34.9
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.2e-20 104.4 238 34.5
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.6e-20 104.0 256 33.6
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.6e-20 104.0 253 32.0
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.1e-20 103.6 231 32.0
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.5e-20 102.8 235 31.9
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 3.5e-20 102.8 256 32.8
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.6e-20 102.4 235 32.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 6.0e-20 102.1 229 34.1
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 6.0e-20 102.1 238 34.5
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.8e-20 101.7 238 34.5
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.8e-20 101.7 230 32.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.8e-20 101.7 259 32.0
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 7.8e-20 101.7 235 36.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 7.8e-20 101.7 230 33.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.0e-19 101.3 230 32.2
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-19 100.9 233 35.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-19 100.9 238 34.0
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.7e-19 100.5 226 32.7
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.3e-19 100.1 225 32.9
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.3e-19 100.1 231 33.3
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.0e-19 99.8 225 35.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.9e-19 99.4 238 33.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.9e-19 99.4 224 32.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.9e-19 99.4 224 32.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 6.6e-19 98.6 246 33.7
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 6.6e-19 98.6 231 34.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.6e-19 98.6 225 32.4
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.1e-18 97.8 229 33.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.1e-18 97.8 221 33.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-18 97.8 233 33.9
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-18 97.8 252 31.7
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.3e-18 95.9 231 30.7
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 4.3e-18 95.9 236 33.1
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.3e-18 95.1 260 31.9
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 7.3e-18 95.1 233 32.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-17 94.4 230 32.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.3e-17 94.4 225 36.0
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.8e-17 93.2 241 33.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 4.8e-17 92.4 221 31.7
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.8e-17 92.4 198 32.3
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 8.1e-17 91.7 218 33.0
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.1e-17 91.7 218 35.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.1e-16 91.3 245 30.6
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.4e-16 90.9 240 33.3
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.8e-16 90.5 238 35.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 6.9e-16 88.6 230 31.7
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.2e-15 87.8 222 33.3
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-15 87.4 223 32.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.5e-15 87.4 234 34.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 5.8e-15 85.5 225 31.1
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 7.6e-15 85.1 233 31.8
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.7e-14 84.0 236 31.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.4e-14 82.0 229 31.4
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.4e-13 80.9 231 34.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.9e-13 80.5 224 31.7
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.4e-13 80.1 224 32.1
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.4e-13 80.1 224 32.1
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.4e-13 80.1 224 32.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.4e-13 80.1 239 31.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.2e-13 79.7 224 32.1
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.2e-13 79.7 224 32.1
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.2e-13 79.3 237 27.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 7.1e-13 78.6 238 29.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 7.1e-13 78.6 226 31.9
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 9.3e-13 78.2 232 29.3
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 4.6e-12 75.9 247 28.3
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 7.9e-12 75.1 224 31.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-11 74.3 226 31.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.3e-11 73.6 238 29.8
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 3.3e-10 69.7 142 36.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.3e-10 69.3 230 30.4
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.3e-09 67.8 218 29.8
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.6e-09 67.4 229 26.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 6.2e-09 65.5 202 29.7
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 6.2e-09 65.5 83 47.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 8.1e-09 65.1 202 29.2
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 8.1e-09 65.1 203 29.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 8.1e-09 65.1 203 29.6
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 8.1e-09 65.1 202 29.2
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-08 64.7 220 27.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.1e-08 64.7 220 27.7
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.1e-08 63.2 229 27.1
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 9.0e-08 61.6 80 47.5
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 4.5e-07 59.3 230 26.5
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.0e-06 58.2 229 27.5
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 4.9e-06 55.8 215 34.0
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.9e-06 55.8 49 44.9
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 6.4e-06 55.5 214 29.0
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.4e-06 55.1 110 36.4


User provided reference genes

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