Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 6.5e-129 464.2 250 100.0
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 8.6e-97 357.5 250 80.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 6.2e-87 324.7 248 73.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.1e-86 322.4 248 69.0
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 6.9e-86 321.2 248 71.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.6e-85 319.3 249 71.5
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 9.9e-85 317.4 244 71.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.9e-85 317.4 251 68.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.3e-84 317.0 247 70.4
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 2.2e-84 316.2 249 71.1
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.2e-84 316.2 247 70.9
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.2e-84 316.2 247 69.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.9e-84 315.8 247 70.0
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.9e-84 315.1 244 71.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-83 313.9 247 69.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.4e-83 313.5 248 70.6
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.9e-83 313.2 243 65.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.4e-83 312.8 249 70.3
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.2e-83 312.4 249 69.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.2e-83 312.0 250 68.8
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.2e-83 312.0 251 71.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.1e-83 311.2 243 69.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 2.1e-82 309.7 249 68.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.7e-82 309.3 248 68.5
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 6.0e-82 308.1 248 69.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.8e-82 307.8 247 69.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.0e-81 307.4 249 67.5
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.0e-81 307.4 249 68.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.3e-81 306.2 242 69.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.0e-81 305.8 247 68.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 5.1e-81 305.1 247 67.6
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 6.6e-81 304.7 247 67.6
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.1e-80 303.9 249 68.3
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.5e-80 303.5 246 65.4
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.5e-80 303.5 249 64.7
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.9e-80 303.1 247 68.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.9e-80 303.1 247 68.8
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.5e-80 302.8 247 68.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.5e-80 302.8 250 69.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.5e-80 302.8 247 67.6
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.3e-80 302.4 246 67.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 7.3e-80 301.2 245 64.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 7.3e-80 301.2 248 67.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.3e-79 300.4 248 64.9
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.1e-79 299.7 238 70.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.1e-79 299.7 238 68.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.1e-79 299.7 248 66.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.8e-79 298.5 248 70.2
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 6.2e-79 298.1 238 69.7
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.1e-78 297.4 246 65.9
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.1e-78 297.4 248 68.5
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.1e-78 297.4 247 64.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.8e-78 296.6 248 66.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.4e-78 296.2 250 66.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.1e-78 295.8 245 68.2
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 4.0e-78 295.4 247 65.6
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 5.3e-78 295.0 248 66.1
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 6.9e-78 294.7 247 62.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 6.9e-78 294.7 247 65.2
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 9.0e-78 294.3 247 64.8
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 9.0e-78 294.3 259 63.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.2e-77 293.9 244 64.8
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.2e-77 293.9 248 65.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-77 293.5 246 65.4
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.4e-77 292.4 243 67.5
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.6e-77 291.2 246 67.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 9.9e-77 290.8 254 65.4
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.3e-76 290.4 247 66.8
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.7e-76 290.0 201 71.6
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 3.8e-76 288.9 238 66.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.9e-75 286.6 246 66.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.2e-75 285.8 238 68.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.2e-75 285.4 247 60.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.4e-75 285.0 236 65.7
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 5.4e-75 285.0 237 65.8
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 5.4e-75 285.0 248 65.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 5.4e-75 285.0 249 65.5
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 5.4e-75 285.0 202 70.3
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 7.1e-75 284.6 237 65.8
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-74 283.9 246 65.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.6e-74 283.5 264 58.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.7e-74 282.7 245 62.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.7e-74 282.7 250 65.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 6.0e-74 281.6 243 63.8
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 6.0e-74 281.6 243 65.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 7.9e-74 281.2 243 64.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.3e-73 280.4 245 64.1
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.1e-73 278.5 248 61.3
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 8.7e-73 277.7 260 60.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-72 277.3 247 64.8
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 4.3e-72 275.4 250 64.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.3e-72 275.4 249 64.7
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.6e-72 275.0 264 60.6
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-71 273.1 243 61.7
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 3.6e-71 272.3 250 58.8
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.8e-71 271.9 241 61.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.4e-70 270.4 243 60.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 9.0e-70 267.7 193 69.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 3.4e-69 265.8 339 46.9
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 5.8e-69 265.0 243 59.7
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.7e-68 263.5 240 61.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.4e-68 261.2 245 64.1
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-67 260.4 245 64.1
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.5e-67 258.5 290 54.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 6.0e-66 255.0 254 60.6
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 5.1e-65 251.9 270 55.9
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 6.7e-65 251.5 250 56.8
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.1e-64 250.8 226 58.4
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.5e-64 250.4 250 60.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 9.6e-64 247.7 251 53.8
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 4.8e-63 245.4 284 52.5
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.3e-62 241.9 333 48.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 8.4e-60 234.6 243 56.4
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.7e-57 224.9 200 57.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 6.7e-57 224.9 239 57.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 9.6e-56 221.1 169 64.5
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.1e-55 219.9 244 54.9
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.5e-52 208.4 224 52.2
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.2e-51 205.7 245 51.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.6e-50 202.6 228 50.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.1e-48 197.6 247 49.8
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-47 193.7 241 48.1
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.3e-46 188.7 148 64.9
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.4e-43 180.6 166 60.2
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.9e-43 180.3 131 70.2
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.9e-43 180.3 136 66.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-40 171.0 143 62.9
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 5.3e-38 162.2 141 64.5
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.6e-37 159.8 190 48.4
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.5e-36 154.8 134 61.9
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 4.2e-35 152.5 190 55.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 6.7e-33 145.2 256 40.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.2e-28 130.2 201 40.3
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.5e-28 128.3 333 37.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 8.5e-28 128.3 228 36.8
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.1e-27 127.9 240 35.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-24 117.5 102 69.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.2e-23 113.6 106 69.8
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.7e-23 112.8 90 63.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-19 101.3 58 79.3
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 9.4e-19 98.2 86 62.8
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 4.7e-18 95.9 77 61.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 8.0e-18 95.1 105 49.5
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-08 64.7 153 35.3
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.7e-07 59.7 73 50.7
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-06 58.2 34 73.5
Cfa024493 Carpinus fangiana HOM05D003486 ORTHO05D124746 7.0e-06 55.5 170 28.2
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 9.2e-06 55.1 44 59.1


User provided reference genes

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