Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 0.0e+00 1694.1 1012 100.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 0.0e+00 1311.6 1002 76.2
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 0.0e+00 1302.7 971 75.4
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1136.3 984 65.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1134.4 984 65.0
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1095.9 978 63.8
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1094.7 1036 62.0
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.8e-310 1069.3 983 61.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 3.4e-309 1065.1 996 64.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.4e-309 1064.7 1016 61.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 5.8e-309 1064.3 1026 62.7
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 7.6e-309 1063.9 995 60.9
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 2.9e-308 1062.0 999 59.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 1.2e-306 1056.6 1005 62.0
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 2.1e-306 1055.8 991 60.5
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 2.7e-306 1055.4 1027 60.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 7.8e-306 1053.9 986 64.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 6.6e-305 1050.8 1002 62.7
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 6.6e-305 1050.8 995 61.6
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.9e-304 1049.3 997 63.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.2e-303 1046.6 979 64.1
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 4.7e-303 1044.6 986 58.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.8e-302 1042.7 1014 62.6
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 2.0e-301 1039.3 1044 59.4
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.3e-300 1036.6 1001 62.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.8e-300 1035.0 1000 60.6
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.9e-300 1034.6 1000 59.5
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 8.4e-300 1033.9 1021 61.0
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.9e-299 1032.7 1004 62.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.2e-299 1031.6 1055 57.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.7e-298 1028.9 998 62.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 4.6e-298 1028.1 1055 60.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.8e-298 1027.3 990 62.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 3.0e-297 1025.4 988 58.7
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 5.1e-297 1024.6 914 61.8
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 3.3e-296 1021.9 978 59.2
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 1028 60.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.6e-295 1018.5 1003 59.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.1e-294 1015.4 993 63.2
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 5.3e-294 1014.6 977 59.9
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 6.9e-294 1014.2 1006 60.1
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 9.0e-294 1013.8 955 62.8
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 2.0e-293 1012.7 1004 60.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 5.8e-293 1011.1 1020 57.5
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.2e-292 1009.2 1009 60.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.2e-292 1009.2 1023 59.2
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.4e-291 1005.7 1041 57.7
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.2e-291 1005.0 1013 60.2
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 7.1e-291 1004.2 1032 60.3
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 1.2e-290 1003.4 1029 60.3
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 2.1e-290 1002.7 1008 58.9
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 3.5e-290 1001.9 1016 58.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 6.0e-290 1001.1 1025 59.2
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 1.8e-289 999.6 1037 59.8
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 5.1e-289 998.0 994 58.5
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.3e-288 995.0 1020 58.7
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 5.3e-286 988.0 998 56.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.3e-286 988.0 984 57.7
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 9.0e-286 987.3 1020 57.4
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 5.8e-285 984.6 1000 59.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.9e-283 979.5 1018 59.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.2e-283 978.8 1016 59.7
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 5.5e-283 978.0 853 63.9
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.6e-282 974.9 1158 54.2
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.9e-282 974.2 1004 60.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 6.2e-279 964.5 885 60.7
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.2e-277 960.3 952 60.0
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.6e-277 959.1 1007 56.3
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.7e-276 956.4 1034 54.3
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 8.4e-276 954.1 995 58.5
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.3e-273 946.0 996 53.9
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.1e-272 943.7 997 57.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.5e-272 942.6 995 58.4
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.6e-271 939.9 1019 57.4
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.8e-270 936.4 910 58.9
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.9e-270 934.5 929 57.8
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.9e-267 926.4 998 57.6
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 5.5e-267 924.9 1007 57.2
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.7e-266 922.5 869 60.1
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.8e-265 919.8 997 56.0
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 3.9e-265 918.7 925 59.6
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.1e-265 918.3 917 58.9
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 3.7e-263 912.1 924 58.4
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 9.1e-262 907.5 911 58.1
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.5e-260 901.4 1019 55.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 9.4e-259 897.5 878 61.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.3e-255 887.1 850 59.4
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.0e-253 879.8 993 52.0
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 2.5e-251 872.8 986 53.0
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.7e-250 869.4 913 56.0
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.8e-249 866.7 1025 56.6
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.3e-248 862.4 1023 51.3
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.4e-246 856.3 1000 55.4
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.0e-246 854.7 1036 53.8
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.8e-244 849.0 874 56.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.0e-241 840.9 995 50.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.4e-241 840.5 798 60.5
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.4e-238 829.7 1024 49.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.8e-223 779.6 1027 47.5
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.6e-219 765.4 610 66.6
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.2e-214 749.6 675 63.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.2e-214 748.0 869 54.7
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.5e-211 740.0 1005 47.9
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.2e-202 711.1 575 65.6
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.0e-197 692.2 604 62.9
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 3.6e-186 656.4 844 45.6
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 5.3e-185 652.5 921 43.5
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.9e-183 646.7 973 42.8
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.1e-178 630.6 896 44.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.5e-171 607.1 497 69.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 3.8e-167 593.2 552 60.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 2.5e-163 580.5 731 52.5
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.5e-152 544.7 573 54.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 8.5e-151 538.9 887 40.2
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 6.5e-143 512.7 610 49.0
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.3e-130 471.9 904 36.5
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 9.7e-123 445.7 357 65.8
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 7.5e-107 392.9 840 36.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.8e-99 365.9 350 59.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.4e-83 314.3 730 38.4
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.9e-81 308.5 388 48.2
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.6e-77 295.4 650 36.0
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 4.2e-73 280.8 744 30.6
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 9.0e-68 263.1 573 36.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.3e-63 249.2 200 67.5
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 2.7e-56 224.9 212 59.9
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.9e-55 221.1 179 68.2
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.9e-50 204.1 230 54.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.1e-44 186.4 179 60.9
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.5e-38 166.0 132 73.5
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 8.5e-34 150.2 158 55.1
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 5.5e-33 147.5 158 54.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.3e-29 136.3 95 71.6
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.0e-27 129.0 200 53.5
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.6e-22 112.1 99 63.6
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 8.2e-21 107.1 180 46.1
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.3e-18 99.8 58 79.3
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 2.2e-18 99.0 84 57.1
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 3.2e-17 95.1 51 86.3
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 9.4e-17 93.6 190 41.6
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.0e-07 62.0 115 40.0
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.5e-06 59.7 39 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.5e-06 59.7 39 66.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 5.7e-06 57.8 39 64.1
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 5.7e-06 57.8 39 64.1


User provided reference genes

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