Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 0.0e+00 1110.9 693 100.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 6.3e-198 694.9 677 70.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.8e-195 685.6 682 68.9
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 7.4e-130 468.8 689 58.1
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.0e-106 391.0 621 48.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 5.7e-106 389.4 605 46.4
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 9.4e-101 372.1 584 51.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.4e-99 368.2 480 50.6
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.7e-99 365.9 439 51.9
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 4.4e-98 363.2 620 46.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 9.7e-98 362.1 644 43.9
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.5e-95 354.8 594 45.1
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.5e-95 354.8 525 57.3
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 7.7e-95 352.4 475 49.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 1.7e-94 351.3 643 41.7
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.5e-94 349.4 606 42.7
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.2e-93 347.1 605 44.0
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.7e-92 343.2 660 44.2
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 8.0e-92 342.4 691 39.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.0e-91 340.1 585 48.7
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 4.0e-91 340.1 477 47.6
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.0e-91 340.1 691 39.5
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 6.7e-91 339.3 627 41.9
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 6.7e-91 339.3 486 47.3
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.4e-90 336.7 595 49.4
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.3e-89 335.1 632 47.0
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.7e-89 334.7 511 56.0
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.8e-89 334.0 382 60.5
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 6.3e-89 332.8 479 51.4
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.8e-88 331.3 394 65.2
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 3.1e-88 330.5 500 59.2
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.1e-88 330.5 696 44.7
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.6e-87 328.2 515 55.1
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 2.6e-87 327.4 488 45.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 3.5e-87 327.0 478 46.2
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 5.9e-87 326.2 472 46.8
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.9e-87 326.2 647 39.3
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 7.7e-87 325.9 489 46.2
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.9e-85 321.2 619 47.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 7.2e-85 319.3 532 49.8
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.6e-84 317.0 738 39.6
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 6.1e-84 316.2 581 50.6
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 6.1e-84 316.2 389 66.1
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.0e-83 315.5 491 45.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.0e-83 315.5 611 49.6
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.4e-83 315.1 672 46.1
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.8e-83 314.7 618 40.0
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.8e-83 314.7 511 55.4
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.8e-83 314.7 502 55.6
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.3e-83 314.3 560 41.6
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.2e-83 313.2 567 42.7
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.2e-82 312.0 484 48.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.0e-82 311.2 645 45.4
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 3.4e-82 310.5 606 41.9
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.3e-81 308.5 704 45.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-81 307.0 723 42.2
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.4e-80 304.3 512 44.3
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-80 303.9 596 41.1
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.6e-79 301.6 573 41.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-79 301.6 598 41.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.7e-79 300.8 492 46.3
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.5e-79 300.4 517 44.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.5e-79 300.1 721 36.9
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 4.5e-79 300.1 527 53.7
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.9e-79 299.7 590 39.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.0e-78 298.9 400 49.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.7e-78 298.1 688 38.1
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 5.0e-78 296.6 511 42.7
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 6.5e-78 296.2 619 49.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 6.5e-78 296.2 473 45.0
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-77 294.7 539 47.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 7.2e-77 292.7 510 42.2
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.6e-76 291.6 589 40.2
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.6e-76 291.6 468 44.9
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-76 291.2 518 43.1
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.6e-76 290.4 483 46.4
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-76 290.4 469 44.3
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 4.7e-76 290.0 677 40.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.7e-76 290.0 522 43.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.0e-75 288.9 716 40.9
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.4e-75 288.5 517 53.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 5.2e-75 286.6 710 43.2
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.2e-75 286.6 662 42.4
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-74 285.4 370 56.8
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.5e-74 285.0 434 45.6
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.0e-74 284.6 646 38.1
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.4e-74 283.9 705 38.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 5.7e-74 283.1 502 47.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.8e-74 282.3 722 40.3
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 9.8e-74 282.3 637 45.4
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 1.1e-72 278.9 587 48.0
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.4e-72 278.5 599 42.6
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.8e-72 278.1 497 53.5
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.1e-72 277.3 496 53.8
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 3.1e-72 277.3 495 49.3
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 4.1e-72 276.9 650 45.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 9.1e-72 275.8 495 50.9
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.2e-71 275.4 472 50.6
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.2e-71 275.4 522 49.6
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-71 274.6 524 49.6
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.8e-70 270.4 494 49.4
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 6.6e-70 269.6 699 42.5
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.5e-69 268.5 512 50.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 2.5e-69 267.7 531 47.6
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.5e-69 267.7 511 49.3
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 7.2e-69 266.2 466 46.1
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.6e-68 265.0 442 45.2
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.7e-68 263.5 467 41.1
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.4e-67 261.9 703 40.7
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.8e-67 261.5 500 46.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.3e-67 261.2 693 42.1
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-67 260.8 543 38.3
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 6.8e-67 259.6 586 36.7
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 8.9e-67 259.2 374 47.3
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.0e-66 258.1 592 46.1
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.0e-66 258.1 669 39.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 4.9e-65 253.4 467 50.7
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 4.9e-65 253.4 556 45.1
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 8.3e-65 252.7 567 37.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 2.0e-63 248.1 507 43.4
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 3.5e-63 247.3 630 40.2
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.9e-61 241.5 684 34.4
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.3e-61 240.7 347 60.8
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.6e-60 238.4 482 46.5
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.8e-59 235.0 596 44.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 4.0e-59 233.8 472 46.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-58 232.3 447 48.8
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.6e-55 221.9 701 38.1
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 6.0e-55 219.9 300 48.0
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 9.5e-53 212.6 896 29.1
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-51 209.1 489 45.0
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 8.4e-41 172.9 323 50.2
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 8.4e-41 172.9 552 33.5
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.4e-40 171.4 316 41.5
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.6e-39 168.7 230 48.7
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 4.3e-37 160.6 166 57.2
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.6e-34 151.4 110 70.9
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.4e-33 146.7 407 37.3
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.4e-33 146.4 412 32.0
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 7.1e-32 143.3 387 48.3
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.2e-31 142.5 98 75.5
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.9e-30 137.5 415 30.8
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 5.6e-29 133.7 407 31.2
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.4e-27 129.0 90 73.3
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.6e-26 124.8 536 30.2
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.4e-24 119.0 513 29.8
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 4.2e-24 117.5 362 36.2
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 2.1e-23 115.2 264 36.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 3.5e-23 114.4 119 58.0
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.4e-19 101.7 232 37.5
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.4e-19 101.7 436 26.6
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.3e-19 100.5 74 74.3
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 9.0e-19 99.8 98 62.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.5e-18 99.0 157 45.2
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.9e-17 94.7 66 74.2
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 5.1e-14 84.0 53 71.7
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 2.4e-11 75.1 76 57.9
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 4.5e-10 70.9 60 58.3
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-09 69.3 47 72.3
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.8e-09 67.8 47 70.2
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 4.9e-09 67.4 54 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 7.1e-08 63.5 84 41.7
Cre12.g514550 Chlamydomonas reinhardtii HOM05D003628 ORTHO05D004253 4.6e-07 60.8 95 35.8
MBI04_g25319_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 5.1e-06 57.4 131 35.1
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.7e-06 56.6 36 75.0


User provided reference genes

Program Settings