Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.2e-202 709.5 340 100.0
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 5.9e-149 531.2 320 79.4
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 7.0e-134 481.1 278 80.2
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-131 473.4 277 78.3
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.8e-130 469.2 259 83.8
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.4e-128 462.2 278 78.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 5.8e-128 461.5 293 74.7
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.7e-127 459.9 315 69.5
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 8.3e-127 457.6 312 69.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.5e-125 452.2 288 72.9
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.5e-125 452.2 291 72.2
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 6.0e-125 451.4 287 72.1
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.3e-124 449.5 277 75.1
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 6.6e-124 448.0 279 74.9
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 5.6e-123 444.9 284 71.8
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 6.2e-122 441.4 307 68.4
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 6.2e-122 441.4 277 73.6
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-121 440.7 282 72.0
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.8e-121 439.9 277 73.6
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.3e-121 439.5 282 71.6
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.6e-120 436.0 281 70.8
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 4.4e-120 435.3 277 72.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 7.6e-120 434.5 280 71.4
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 7.6e-120 434.5 292 71.2
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 9.9e-120 434.1 318 66.4
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.7e-119 433.3 277 70.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.2e-119 433.0 280 71.4
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.9e-119 432.6 280 71.8
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 2.9e-119 432.6 279 73.1
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 3.7e-119 432.2 298 67.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.1e-118 430.6 280 70.7
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.4e-118 430.3 282 70.6
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.4e-118 429.5 313 66.1
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 9.2e-118 427.6 290 70.3
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.0e-116 424.1 282 71.3
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 2.3e-116 422.9 288 69.8
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.0e-116 422.5 323 63.5
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 5.1e-116 421.8 280 72.1
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.9e-115 419.9 308 65.3
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-115 419.5 284 70.4
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.5e-115 419.5 284 70.4
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.3e-115 419.1 393 55.0
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.3e-115 418.7 341 60.7
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.2e-114 417.2 278 71.2
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.2e-114 417.2 301 67.1
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 2.1e-114 416.4 282 69.5
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 6.2e-114 414.8 278 70.1
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.8e-113 413.3 267 70.0
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.8e-113 413.3 283 68.9
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.8e-113 413.3 283 68.9
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.1e-113 412.5 332 61.4
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 8.9e-113 411.0 275 69.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.2e-112 410.6 276 68.8
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 2.6e-112 409.5 282 68.8
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 4.4e-112 408.7 277 70.0
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 5.8e-112 408.3 275 68.7
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 7.6e-112 407.9 354 58.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 9.9e-112 407.5 289 67.1
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 2.2e-111 406.4 290 66.9
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 4.9e-111 405.2 279 70.3
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 6.4e-111 404.8 280 67.9
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 8.4e-111 404.4 284 68.3
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.1e-110 404.1 396 53.8
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.4e-110 402.9 280 67.9
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-109 400.6 282 67.7
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.2e-109 400.6 282 67.7
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.6e-109 400.2 288 65.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.7e-109 399.4 358 56.7
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.3e-108 397.1 281 67.6
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.3e-108 397.1 281 67.6
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.7e-108 396.7 280 67.1
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 3.0e-108 396.0 280 66.8
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 5.1e-108 395.2 282 66.3
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 5.1e-108 395.2 279 66.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.9e-107 393.3 280 66.1
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 3.3e-107 392.5 280 66.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 4.3e-107 392.1 280 66.4
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.6e-106 390.2 280 66.1
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 2.8e-106 389.4 241 73.9
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 3.6e-106 389.0 278 65.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 4.8e-106 388.7 286 66.4
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-105 387.1 280 65.4
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-105 387.1 280 65.4
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.4e-105 387.1 280 65.4
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.9e-105 384.8 238 73.9
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.1e-102 377.5 281 63.7
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 7.1e-102 374.8 236 73.7
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 9.3e-102 374.4 277 63.5
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.1e-99 367.5 275 64.4
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.1e-98 363.2 237 71.7
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.8e-98 362.8 302 60.3
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.8e-98 362.1 267 64.8
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.4e-97 360.5 322 57.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.5e-96 357.1 309 58.9
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.9e-96 354.4 298 58.4
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-94 350.1 297 56.9
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.6e-93 347.1 279 60.2
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.2e-87 326.6 270 56.7
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 6.0e-85 318.5 188 77.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.1e-83 314.3 186 77.4
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 4.8e-82 308.9 279 55.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.0e-79 301.2 224 65.6
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 4.2e-78 295.8 323 51.1
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 5.5e-78 295.4 219 64.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.5e-77 292.7 228 62.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.4e-73 280.8 304 49.7
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.2e-72 277.7 187 70.1
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.2e-69 267.7 268 50.7
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 5.3e-65 252.3 253 49.0
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 3.8e-63 246.1 144 75.7
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 2.5e-62 243.4 268 44.4
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 8.8e-60 235.0 252 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 5.7e-59 232.3 200 57.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.0e-52 209.5 194 55.2
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.4e-46 188.3 111 78.4
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.4e-46 188.3 111 78.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.4e-35 152.9 98 71.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.0e-31 141.7 89 69.7
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.3e-31 141.4 94 68.1
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 5.0e-31 139.4 103 63.1
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.0e-31 139.4 93 69.9
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 9.8e-27 125.2 91 68.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.7e-26 124.4 89 65.2
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-26 124.0 98 60.2
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 4.6e-24 116.3 95 60.0
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.0e-23 115.2 61 80.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.5e-22 110.5 140 44.3
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.1e-21 107.5 73 67.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 2.1e-21 107.5 86 59.3
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 4.7e-21 106.3 112 47.3
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.2e-21 105.9 75 66.7
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.5e-19 101.3 55 76.4
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.7e-18 97.8 63 68.3
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 8.6e-15 85.5 63 60.3
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 4.3e-14 83.2 65 64.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.8e-12 77.8 37 83.8
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.1e-12 77.0 57 59.6
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.0e-11 74.3 46 69.6
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.9e-10 70.5 35 77.1
EL10Ac8g20282 Beta vulgaris HOM05D002609 ORTHO05D002820 1.0e-07 62.0 160 28.1
AUR62044208 Chenopodium quinoa HOM05D002609 ORTHO05D002820 8.6e-07 58.9 160 26.9
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.1e-06 58.5 33 63.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.1e-06 58.5 33 63.6
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 1.5e-06 58.2 53 49.1


User provided reference genes

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