Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 6.7e-207 723.8 365 100.0
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 9.5e-161 570.5 324 87.3
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 4.1e-156 555.1 362 76.8
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.5e-153 546.6 358 78.8
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 8.0e-152 540.8 356 77.2
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.8e-151 539.7 369 74.0
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 2.3e-151 539.3 358 77.7
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 3.4e-150 535.4 360 75.8
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.2e-149 532.7 360 75.8
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.2e-149 532.7 359 76.6
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 2.9e-149 532.3 362 76.2
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 3.7e-149 531.9 325 80.9
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 3.7e-149 531.9 323 79.9
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 4.9e-149 531.6 359 74.7
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 1.4e-148 530.0 356 73.3
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 3.2e-148 528.9 359 74.4
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 4.1e-148 528.5 360 75.0
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.2e-147 526.9 323 79.9
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.2e-147 526.9 323 79.6
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 3.5e-147 525.4 361 74.2
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 6.0e-147 524.6 362 73.5
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.0e-146 523.9 360 75.0
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.3e-145 518.8 360 74.7
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 3.6e-144 515.4 361 74.0
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 3.1e-143 512.3 361 72.9
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.2e-142 510.4 364 69.8
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.4e-142 508.8 378 69.3
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 4.4e-142 508.4 385 69.4
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 4.4e-142 508.4 360 72.8
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 9.8e-142 507.3 360 71.9
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 2.2e-141 506.1 374 70.3
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 6.4e-141 504.6 370 70.8
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.4e-140 503.4 360 70.3
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 2.4e-140 502.7 360 71.7
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 5.4e-140 501.5 370 70.5
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 7.1e-140 501.1 375 69.6
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.1e-140 501.1 360 69.7
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 9.2e-140 500.7 362 70.4
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 2.7e-139 499.2 363 70.8
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 4.6e-139 498.4 360 69.7
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.0e-138 497.3 360 70.0
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 3.0e-138 495.7 358 70.9
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 1.1e-137 493.8 360 69.2
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 1.1e-137 493.8 431 61.5
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 1.5e-137 493.4 310 78.4
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.5e-137 493.4 316 74.7
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.9e-137 493.0 356 69.9
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 2.5e-137 492.7 396 65.4
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 5.6e-137 491.5 366 71.0
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 7.3e-137 491.1 364 70.1
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 9.5e-137 490.7 361 70.6
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 2.8e-136 489.2 359 69.4
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.8e-136 489.2 317 74.8
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.6e-136 488.8 377 67.6
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 3.6e-136 488.8 366 68.6
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 4.7e-136 488.4 397 65.7
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.3e-135 486.1 363 68.9
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.3e-135 486.1 289 80.6
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 4.0e-135 485.3 360 68.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 6.8e-135 484.6 351 71.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 8.9e-135 484.2 360 67.8
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.2e-134 483.8 359 69.6
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 1.5e-134 483.4 358 70.1
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.4e-134 482.3 354 69.8
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 3.4e-134 482.3 287 81.2
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 4.4e-134 481.9 359 69.6
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.7e-133 479.9 364 68.7
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 2.2e-133 479.6 360 67.8
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.2e-133 479.6 359 67.7
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 3.7e-133 478.8 359 69.1
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 6.4e-133 478.0 359 68.5
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-132 477.2 359 67.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.9e-132 476.5 372 65.6
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.9e-132 476.5 365 69.0
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.4e-132 476.1 310 75.5
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 5.4e-132 474.9 324 72.2
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 7.1e-132 474.6 361 68.7
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 7.1e-132 474.6 361 65.1
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.2e-131 473.8 397 64.5
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.2e-131 473.8 364 68.4
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.6e-131 473.4 364 68.1
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 3.5e-131 472.2 368 65.5
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 7.8e-131 471.1 352 68.2
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.3e-130 470.3 316 74.4
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 3.0e-130 469.2 316 73.4
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 1.9e-129 466.5 361 65.4
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 2.5e-129 466.1 316 73.1
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 2.5e-129 466.1 316 73.1
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 6.2e-128 461.5 321 70.7
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.4e-127 460.3 356 69.1
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.8e-127 459.9 282 80.9
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 8.9e-127 457.6 355 65.9
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.2e-126 457.2 362 65.5
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-126 456.8 308 73.7
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.6e-126 454.5 333 69.4
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 2.9e-125 452.6 360 64.4
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 6.4e-125 451.4 330 70.0
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 8.4e-125 451.1 355 67.9
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 6.0e-123 444.9 351 66.1
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.1e-121 440.7 303 73.6
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 2.5e-121 439.5 258 83.7
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 9.6e-121 437.6 315 70.8
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.7e-117 426.8 255 83.5
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.2e-115 420.6 258 78.7
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.6e-102 376.3 306 61.4
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 3.4e-102 375.9 257 72.8
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.7e-99 366.3 330 57.0
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.8e-98 363.6 322 57.8
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 4.5e-94 349.0 355 55.2
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 1.0e-93 347.8 257 66.5
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 5.0e-93 345.5 304 61.5
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 7.2e-92 341.7 244 69.3
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 1.2e-91 340.9 364 53.6
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 2.1e-91 340.1 366 53.8
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.0e-90 337.8 195 84.6
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 1.3e-90 337.4 361 54.6
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.6e-83 313.9 284 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 8.8e-82 308.1 349 48.1
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.5e-78 297.4 265 58.9
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.4e-78 296.2 370 47.8
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 6.5e-77 292.0 198 75.8
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.5e-76 290.0 194 73.2
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.0e-69 265.8 186 71.5
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.2e-68 261.9 356 39.0
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.0e-66 258.1 185 71.4
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.2e-64 250.4 198 68.2
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.0e-61 241.5 163 73.0
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-61 241.1 203 62.6
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.9e-61 240.0 344 41.6
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.2e-60 236.1 169 73.4
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 2.6e-57 226.9 183 63.9
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 2.0e-54 217.2 354 39.0
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 5.9e-54 215.7 285 41.1
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.7e-48 197.6 114 80.7
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.7e-48 196.4 124 72.6
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 4.9e-48 196.1 255 44.3
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-47 194.9 125 70.4
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.0e-46 190.7 150 64.0
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.3e-44 182.2 366 35.0
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.0e-37 160.2 129 62.8
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 3.1e-34 150.2 325 35.4
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 2.0e-33 147.5 121 59.5
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.0e-30 137.5 170 49.4
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 4.3e-28 129.8 101 67.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 6.2e-27 125.9 68 86.8
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 3.2e-23 113.6 87 65.5
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.4e-18 98.2 80 61.2
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.4e-17 93.6 72 63.9
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-13 81.6 53 75.5
HanXRQChr04g0113561 Helianthus annuus HOM05D004989 ORTHO05D227593 5.2e-10 69.7 57 71.9


User provided reference genes

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