Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 0.0e+00 1127.5 578 100.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.7e-294 1013.1 569 91.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 3.0e-286 988.0 576 88.9
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 7.2e-272 940.3 574 84.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 7.7e-266 920.2 576 81.9
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 6.5e-265 917.1 541 86.3
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.9e-264 915.6 540 85.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 3.2e-264 914.8 552 82.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.2e-264 914.8 560 82.5
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.2e-264 913.7 578 82.2
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 6.1e-263 910.6 560 81.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.0e-262 909.8 561 82.0
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.8e-262 909.1 561 81.8
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 8.8e-262 906.7 563 81.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.2e-261 906.4 566 81.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.6e-261 905.2 569 81.2
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.7e-261 904.0 549 82.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 9.8e-261 903.3 551 83.1
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 3.7e-260 901.4 553 82.8
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.3e-260 900.6 565 80.2
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.1e-259 899.8 563 80.8
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.1e-259 899.8 544 82.4
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.4e-259 899.4 529 84.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.8e-259 899.0 591 77.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.8e-259 899.0 537 84.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 2.4e-259 898.7 574 80.5
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 4.1e-259 897.9 572 80.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 5.4e-259 897.5 562 80.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 5.4e-259 897.5 519 85.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.4e-259 897.5 543 83.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 7.0e-259 897.1 569 80.5
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-258 896.3 565 81.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.2e-258 896.3 542 83.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.0e-258 895.6 533 83.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.0e-258 895.6 514 86.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.7e-258 895.2 566 80.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.5e-258 894.8 530 83.6
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 7.7e-258 893.6 573 80.3
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.3e-257 892.9 568 80.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.7e-257 892.5 565 78.9
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.7e-257 892.5 569 80.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.2e-257 892.1 569 78.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.8e-257 891.3 576 79.3
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.1e-256 889.8 530 83.8
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.2e-256 887.9 583 79.1
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.6e-255 885.9 575 80.0
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.6e-255 884.8 565 80.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.7e-255 884.4 535 81.7
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 8.0e-255 883.6 572 77.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.4e-254 882.9 532 81.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-254 881.7 603 77.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 3.0e-254 881.7 578 78.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 3.0e-254 881.7 580 78.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.0e-254 881.3 575 79.7
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.0e-254 881.3 565 78.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 5.2e-254 880.9 536 83.4
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 6.8e-254 880.6 557 80.8
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.0e-253 879.0 571 78.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 5.7e-253 877.5 575 77.4
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.8e-252 875.2 560 78.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.7e-252 874.8 561 79.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 6.3e-252 874.0 558 79.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 6.3e-252 874.0 558 79.2
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 6.3e-252 874.0 558 79.2
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 6.3e-252 874.0 558 79.2
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 6.3e-252 874.0 558 79.2
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 3.1e-251 871.7 558 80.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 9.2e-251 870.2 557 78.6
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-250 869.8 543 80.7
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.6e-250 869.4 543 80.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.6e-250 869.4 563 77.3
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.0e-249 866.7 580 75.9
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.3e-249 866.3 575 77.0
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-249 866.3 574 78.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-249 866.3 514 82.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.3e-249 865.5 556 79.7
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.5e-248 862.8 558 78.1
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.5e-248 862.8 539 79.8
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 2.5e-248 862.1 544 78.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.5e-248 862.1 571 76.4
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-248 861.3 539 79.6
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.2e-247 859.8 575 76.3
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.1e-247 859.0 589 74.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.7e-247 857.8 527 79.9
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.3e-246 855.5 565 77.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 6.8e-246 854.0 544 78.7
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.9e-246 853.6 550 77.8
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-245 851.7 549 78.1
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 9.8e-245 850.1 577 75.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-244 848.2 581 75.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.4e-243 844.3 542 77.5
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 5.4e-243 844.3 552 78.3
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 7.0e-243 844.0 572 74.8
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 7.8e-242 840.5 577 75.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.8e-238 829.3 564 74.8
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-236 822.8 514 79.2
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.4e-236 820.8 561 74.5
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.4e-235 819.7 476 85.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.4e-235 818.9 559 74.8
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 7.8e-234 813.9 565 74.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 9.5e-232 807.0 478 83.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 5.8e-229 797.7 493 81.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.3e-224 781.6 555 71.0
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.6e-224 781.2 484 81.4
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.2e-221 773.5 517 76.2
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.6e-221 772.3 563 73.4
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.3e-220 770.0 495 75.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.6e-218 763.1 519 71.7
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.2e-214 748.0 580 66.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.0e-209 732.3 417 88.2
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.1e-207 724.2 535 71.2
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 4.5e-205 718.4 450 77.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 5.4e-203 711.4 456 77.4
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.5e-200 702.6 571 64.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.4e-200 701.0 560 67.1
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.2e-196 689.5 579 66.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.9e-193 678.7 547 62.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.0e-189 666.4 586 62.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.0e-188 664.1 460 71.7
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.0e-185 654.1 548 59.9
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 3.7e-183 645.6 511 64.4
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.6e-181 639.4 567 62.6
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.6e-168 596.3 318 91.5
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 6.1e-162 575.1 500 62.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-161 573.5 567 57.8
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.1e-158 564.3 522 57.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 5.9e-157 558.5 350 81.4
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.3e-156 557.4 459 61.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.5e-155 553.9 504 57.7
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-155 552.7 504 57.5
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 9.4e-155 551.2 503 57.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 6.8e-137 491.9 331 71.3
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.6e-131 472.2 501 51.3
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.9e-125 452.2 500 47.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.9e-118 430.6 604 45.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 4.3e-107 392.9 534 40.1
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.7e-98 362.8 428 49.1
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.6e-90 336.7 447 41.2
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-88 331.3 346 54.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.8e-71 273.5 165 84.2
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.5e-70 269.6 185 72.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 9.0e-65 252.3 566 35.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.4e-60 238.4 315 45.7
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-53 214.9 401 38.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.5e-48 198.4 138 74.6
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.9e-44 183.7 105 83.8
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.7e-44 183.0 511 30.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.2e-40 172.2 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 2.9e-39 167.5 109 80.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.0e-31 140.2 137 55.5
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.5e-31 139.4 102 76.5
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.9e-30 138.3 80 80.0
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.6e-29 134.0 89 80.9
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 7.2e-22 109.8 65 81.5
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 2.3e-20 104.8 91 62.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.7e-18 98.6 71 74.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-17 94.4 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 4.5e-16 90.5 50 86.0
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.8e-15 87.4 89 47.2
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-14 84.3 49 85.7
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 4.3e-14 84.0 56 76.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 2.8e-13 81.3 53 75.5
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.8e-12 78.6 77 58.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.7e-10 70.9 43 79.1
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 4.1e-09 67.4 52 65.4
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 3.5e-08 64.3 52 61.5
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 7.3e-06 56.6 148 36.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 9.5e-06 56.2 89 39.3


User provided reference genes

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