Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0359091 Helianthus annuus HOM05D014416 ORTHO05D011458 0.0e+00 1504.2 791 100.0
HanXRQChr14g0445841 Helianthus annuus HOM05D014416 ORTHO05D011458 0.0e+00 1225.3 833 80.2
HanXRQChr01g0028051 Helianthus annuus HOM05D014416 ORTHO05D011458 0.0e+00 1214.1 799 81.9
HanXRQChr14g0450971 Helianthus annuus HOM05D014416 ORTHO05D011458 9.3e-113 412.1 779 36.7
HanXRQChr14g0433191 Helianthus annuus HOM05D011335 ORTHO05D013889 1.3e-61 242.3 696 29.0
HanXRQChr12g0359081 Helianthus annuus HOM05D014416 ORTHO05D011458 1.4e-52 212.2 119 80.7
HanXRQChr16g0531191 Helianthus annuus HOM05D009775 ORTHO05D011458 3.5e-51 207.6 672 26.8
HanXRQChr02g0055151 Helianthus annuus HOM05D011335 ORTHO05D013889 2.1e-40 171.8 407 30.0
Lsat_1_v5_gn_0_40461 Lactuca sativa HOM05D009001 ORTHO05D011396 3.0e-34 151.4 777 22.5
HanXRQChr01g0030191 Helianthus annuus HOM05D009775 ORTHO05D011458 3.3e-33 147.9 239 35.6
HanXRQChr02g0042221 Helianthus annuus HOM05D009775 ORTHO05D011458 3.2e-28 131.3 242 32.2
HanXRQChr15g0468421 Helianthus annuus HOM05D009775 ORTHO05D011458 5.4e-28 130.6 242 32.2
HanXRQChr16g0527631 Helianthus annuus HOM05D009775 ORTHO05D011458 2.1e-27 128.6 417 28.3
HanXRQChr10g0294121 Helianthus annuus HOM05D014416 ORTHO05D011458 3.0e-26 124.8 225 33.3
HanXRQChr11g0340571 Helianthus annuus HOM05D009775 ORTHO05D011458 1.1e-25 122.9 436 25.0
HanXRQChr02g0055161 Helianthus annuus HOM05D009775 ORTHO05D011458 1.4e-23 115.9 209 30.6
HanXRQChr08g0207601 Helianthus annuus HOM05D002069 ORTHO05D001421 9.0e-23 113.2 105 51.4
HanXRQChr09g0239111 Helianthus annuus HOM05D009775 ORTHO05D011458 3.4e-22 111.3 187 32.6
HanXRQChr10g0308551 Helianthus annuus HOM05D014416 ORTHO05D011458 9.9e-22 109.8 121 46.3
Lsat_1_v5_gn_1_90641 Lactuca sativa HOM05D009001 ORTHO05D011396 6.0e-19 100.5 176 34.1
Lsat_1_v5_gn_5_59900 Lactuca sativa HOM05D009001 ORTHO05D011396 7.4e-17 93.6 334 24.6
Lsat_1_v5_gn_4_119420 Lactuca sativa HOM05D009001 ORTHO05D011396 6.2e-16 90.5 206 30.1
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 2.4e-15 88.6 468 23.3
Lsat_1_v5_gn_1_101500 Lactuca sativa HOM05D009001 ORTHO05D011396 1.2e-14 86.3 173 31.8
Zm00001eb133400 Zea mays HOM05D013194 ORTHO05D015061 2.6e-14 85.1 467 23.1
Lsat_1_v5_gn_5_65960 Lactuca sativa HOM05D011335 ORTHO05D013889 2.9e-13 81.6 207 26.6
Lsat_1_v5_gn_5_147040 Lactuca sativa HOM05D011335 ORTHO05D013889 4.9e-13 80.9 207 26.6
Lsat_1_v5_gn_8_4920 Lactuca sativa HOM05D011335 ORTHO05D013889 4.9e-13 80.9 207 26.6
Zm00001eb093240 Zea mays HOM05D013194 ORTHO05D015061 3.2e-12 78.2 465 21.9
ECA246G0066 Erigeron canadensis HOM05D009775 ORTHO05D011458 5.5e-12 77.4 156 32.1
ECA234G3421 Erigeron canadensis HOM05D009775 ORTHO05D011458 4.6e-11 74.3 107 35.5
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.0e-11 73.9 785 20.6
ECA248G3320 Erigeron canadensis HOM05D035679 ORTHO05D011396 1.3e-10 72.8 412 23.3
HanXRQChr14g0430341 Helianthus annuus HOM05D014416 ORTHO05D011458 1.3e-10 72.8 102 38.2
TPR.G11501 Trifolium pratense HOM05D007793 ORTHO05D010104 1.8e-10 72.4 264 24.6
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.7e-10 70.5 764 20.2
Zm00001eb020190 Zea mays HOM05D013194 ORTHO05D015061 8.7e-10 70.1 361 23.0
Lsat_1_v5_gn_1_123440 Lactuca sativa HOM05D009001 ORTHO05D011396 2.5e-09 68.6 386 22.0
TPR.G11532 Trifolium pratense HOM05D007793 ORTHO05D010104 4.3e-09 67.8 277 24.2
ECA234G0032 Erigeron canadensis HOM05D055492 ORTHO05D000062 7.4e-09 67.0 226 27.0
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 9.6e-09 66.6 794 20.0
HanXRQChr12g0375161 Helianthus annuus HOM05D011335 ORTHO05D013889 9.6e-09 66.6 229 25.3
Zm00001eb025630 Zea mays HOM05D013194 ORTHO05D015061 1.3e-08 66.2 355 23.1
ECA236G2459 Erigeron canadensis HOM05D009001 ORTHO05D011396 2.1e-08 65.5 112 33.0
Lsat_1_v5_gn_3_125401 Lactuca sativa HOM05D009001 ORTHO05D011396 2.1e-08 65.5 178 29.2
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 3.7e-08 64.7 178 27.5
Lsat_1_v5_gn_3_26920 Lactuca sativa HOM05D009001 ORTHO05D013330 3.7e-08 64.7 117 33.3
ECA238G2699 Erigeron canadensis HOM05D000107 ORTHO05D000062 6.2e-08 63.9 151 25.8
Sed0025490 Sechium edule HOM05D000539 ORTHO05D000592 6.2e-08 63.9 140 27.9
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.1e-08 63.5 109 34.9
Medtr2g037270 Medicago truncatula HOM05D007793 ORTHO05D010104 1.1e-07 63.2 423 23.4
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 1.4e-07 62.8 141 27.0
ECA234G1155 Erigeron canadensis HOM05D009001 ORTHO05D011396 2.4e-07 62.0 340 23.2
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.4e-07 62.0 452 21.0
EL10As4g23378 Beta vulgaris HOM05D007938 ORTHO05D009929 3.1e-07 61.6 200 24.5
CANSAT56G2878 Cannabis sativa HOM05D000539 ORTHO05D000233 3.1e-07 61.6 276 24.3
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 4.0e-07 61.2 153 26.8
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 5.3e-07 60.8 153 27.5
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 5.3e-07 60.8 95 35.8
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-07 60.8 109 33.0
HanXRQChr10g0315921 Helianthus annuus HOM05D011335 ORTHO05D013889 5.3e-07 60.8 117 29.1
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 6.9e-07 60.5 219 24.2
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 9.0e-07 60.1 174 25.3
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 9.0e-07 60.1 153 26.8
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.2e-06 59.7 721 19.8
Rhsim09G0096300 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.2e-06 59.7 800 18.6
Medtr3g011560 Medicago truncatula HOM05D007793 ORTHO05D010104 1.5e-06 59.3 423 22.9
PSO349G0233 Papaver somniferum HOM05D010375 ORTHO05D015177 1.5e-06 59.3 183 26.8
ECA247G0191 Erigeron canadensis HOM05D000107 ORTHO05D000062 2.0e-06 58.9 171 26.9
Rhsim01G0127800 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.0e-06 58.9 821 18.5
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.4e-06 58.2 184 25.5
Os05g0359000 Oryza sativa ssp. japonica HOM05D013194 ORTHO05D015061 3.4e-06 58.2 429 23.3
PSO170G1413 Papaver somniferum HOM05D010375 ORTHO05D015177 3.4e-06 58.2 183 26.2
Medtr4g043785 Medicago truncatula HOM05D002644 ORTHO05D018018 4.5e-06 57.8 210 25.7
PSO478G4356 Papaver somniferum HOM05D010375 ORTHO05D015177 4.5e-06 57.8 183 26.2
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.5e-06 57.8 178 26.4
EL10Ac4g07898 Beta vulgaris HOM05D009341 ORTHO05D011542 5.8e-06 57.4 847 24.2
Ca_02486_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.8e-06 57.4 189 24.3
ClCG09G008820 Citrullus lanatus HOM05D000539 ORTHO05D000233 5.8e-06 57.4 158 27.8
MELO3C001574.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.8e-06 57.4 98 32.7
Medtr8g017000 Medicago truncatula HOM05D007793 ORTHO05D010104 5.8e-06 57.4 154 28.6
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 5.8e-06 57.4 117 33.3
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 5.8e-06 57.4 117 33.3
EL10Ac5g12071 Beta vulgaris HOM05D007938 ORTHO05D009929 7.6e-06 57.0 134 32.1
Ca_05353_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.6e-06 57.0 182 25.3
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 7.6e-06 57.0 169 26.6
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 7.6e-06 57.0 91 31.9
Zm00001eb014840 Zea mays HOM05D013194 ORTHO05D015061 7.6e-06 57.0 162 25.9
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-05 56.6 186 24.7


User provided reference genes

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