Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.5e-311 1070.8 730 100.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.3e-205 719.2 736 68.3
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.8e-188 662.9 744 57.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 9.3e-184 647.9 776 61.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.1e-183 646.7 761 55.7
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.8e-182 643.7 749 56.2
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.3e-179 632.1 761 54.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.9e-176 623.6 758 55.4
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 5.5e-176 622.1 762 54.5
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 2.1e-175 620.2 759 54.0
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 7.9e-175 618.2 764 58.1
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 3.9e-174 615.9 759 59.0
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.1e-174 615.5 749 54.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.5e-173 614.0 763 53.6
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 2.5e-173 613.2 755 54.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 9.1e-171 604.7 764 53.0
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.6e-170 603.2 756 53.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.5e-169 598.2 757 53.0
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.1e-168 597.8 756 52.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.4e-168 597.4 746 53.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.5e-168 596.7 754 54.1
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.2e-168 595.9 742 53.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.2e-168 595.1 754 52.8
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 7.2e-168 595.1 767 52.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 6.1e-167 592.0 754 54.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 7.9e-167 591.7 761 52.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.0e-166 591.3 761 52.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.0e-166 589.7 746 52.7
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 3.0e-166 589.7 759 53.5
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.5e-165 587.4 764 52.6
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.3e-164 584.3 778 52.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.8e-164 583.2 764 52.5
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.7e-164 582.8 787 51.1
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.1e-163 581.3 759 51.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 4.1e-163 579.3 761 58.2
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 4.1e-163 579.3 759 57.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.0e-163 578.6 765 53.2
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 9.1e-163 578.2 781 60.8
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.2e-162 577.8 775 60.4
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.5e-162 577.4 764 60.7
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 3.4e-162 576.2 757 60.0
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.5e-162 575.9 802 51.2
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.9e-162 575.5 757 51.1
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-161 573.9 777 55.3
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 6.5e-161 572.0 734 52.5
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 6.5e-161 572.0 738 51.6
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 9.4e-160 568.2 786 55.5
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.6e-159 567.4 754 51.7
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.1e-159 567.0 751 54.9
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 6.1e-159 565.5 752 56.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.0e-159 565.1 449 71.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-158 564.3 777 60.5
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-158 563.9 777 60.4
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 6.7e-158 562.0 769 50.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 8.8e-158 561.6 777 60.5
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 8.8e-158 561.6 755 53.1
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.3e-157 559.7 651 55.6
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 5.7e-157 558.9 752 50.1
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-156 557.0 757 50.6
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.2e-156 557.0 765 51.6
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 8.2e-156 555.1 760 51.2
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.4e-155 554.3 764 49.9
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.8e-155 553.9 763 50.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-155 553.5 786 59.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 3.1e-155 553.1 767 49.0
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 5.5e-152 542.3 728 54.7
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 7.2e-152 542.0 748 51.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 9.4e-152 541.6 767 55.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 3.6e-151 539.7 736 54.3
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 5.2e-150 535.8 769 56.8
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.5e-149 534.3 764 48.7
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.0e-149 533.9 765 48.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.6e-149 533.5 736 51.5
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.6e-149 533.5 765 48.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.6e-149 533.5 775 48.6
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 7.5e-149 531.9 764 48.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 4.8e-148 529.3 739 52.4
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.5e-146 523.1 761 52.2
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 7.7e-146 521.9 716 51.8
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.2e-145 520.4 771 52.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.2e-145 520.4 740 48.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.5e-144 516.9 723 51.7
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 7.2e-144 515.4 795 50.8
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 9.4e-144 515.0 787 57.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.0e-142 511.5 681 53.2
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.8e-142 508.4 769 48.9
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.2e-141 508.1 724 48.9
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.4e-141 506.5 456 64.0
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.3e-140 504.6 787 45.9
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.3e-140 504.6 762 47.5
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.3e-140 501.9 777 47.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.4e-139 501.1 748 50.9
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.8e-139 500.7 754 45.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.5e-138 496.5 757 51.8
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.3e-137 493.8 750 49.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.3e-136 490.0 755 46.9
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 1.6e-135 487.6 705 49.4
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 2.0e-133 480.7 759 44.5
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.8e-131 474.2 735 45.4
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 5.9e-130 469.2 776 47.4
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.7e-127 459.5 850 42.7
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 1.2e-125 454.9 757 43.2
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.3e-124 451.4 382 67.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 3.1e-110 403.7 758 42.9
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 6.4e-108 396.0 653 46.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.1e-104 385.2 717 47.0
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.9e-104 384.4 758 41.7
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.4e-102 377.5 453 54.7
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-94 352.1 231 82.3
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 3.4e-93 347.1 574 46.3
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 5.6e-88 329.7 238 78.2
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.8e-86 324.7 744 37.4
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.1e-83 315.5 235 77.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 5.6e-80 303.1 233 71.7
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.8e-79 300.8 213 77.0
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.8e-79 300.8 213 77.0
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 6.4e-76 289.7 186 81.7
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.1e-67 259.6 541 40.9
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.1e-66 256.5 541 40.7
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.3e-65 254.6 174 79.9
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 7.4e-56 223.0 467 39.2
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 6.5e-52 209.9 138 79.0
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-46 192.6 477 37.5
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-45 188.7 493 47.7
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 3.2e-43 181.0 412 36.2
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 6.7e-41 173.3 483 35.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.1e-38 164.5 467 39.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 7.7e-37 159.8 201 54.2
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.2e-34 152.5 359 37.3
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 4.8e-31 140.6 86 88.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.1e-27 129.4 110 64.5
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 5.7e-24 117.1 214 42.5
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.7e-23 115.5 70 88.6
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.7e-23 115.5 70 88.6
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.7e-23 115.5 70 88.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.1e-22 112.8 72 83.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.7e-20 105.5 70 85.7
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.7e-15 89.0 175 41.7
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 8.3e-15 86.7 65 69.2
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 5.9e-13 80.5 243 33.7
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 9.5e-11 73.2 50 86.0
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.0e-09 69.7 282 31.2
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-09 69.3 151 39.7
ECA133G0002 Erigeron canadensis HOM05D004485 ORTHO05D005485 6.8e-09 67.0 33 93.9
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 3.4e-08 64.7 40 80.0
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.3e-07 62.8 355 26.8
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 2.2e-07 62.0 189 40.2
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 3.2e-06 58.2 332 28.0
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 5.4e-06 57.4 328 24.1


User provided reference genes

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