Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 1.2e-206 723.0 385 100.0
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 8.0e-126 454.5 392 65.8
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 3.8e-120 435.6 413 63.9
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 2.6e-108 396.4 393 58.0
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 2.7e-105 386.3 395 57.2
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 2.7e-105 386.3 411 54.5
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 1.3e-104 384.0 403 55.3
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 1.4e-101 374.0 414 52.9
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 4.0e-101 372.5 421 52.0
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 6.8e-101 371.7 399 54.4
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 1.5e-100 370.5 390 55.4
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 3.4e-100 369.4 392 55.4
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 5.8e-100 368.6 399 54.9
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.8e-100 368.6 399 54.9
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.8e-100 368.6 399 54.6
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 5.8e-100 368.6 409 51.8
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.7e-99 367.1 411 53.0
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-99 367.1 399 54.4
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 4.9e-99 365.5 419 51.6
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 2.4e-98 363.2 395 53.7
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 1.2e-97 360.9 412 51.7
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.2e-97 360.9 414 52.7
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.2e-97 360.9 410 51.5
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.6e-97 360.5 409 51.3
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 2.0e-97 360.1 422 51.9
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 4.6e-97 359.0 410 52.0
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 6.0e-97 358.6 412 51.0
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 5.0e-96 355.5 399 52.4
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 6.6e-96 355.1 382 53.4
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 1.9e-95 353.6 398 52.5
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 3.3e-95 352.8 412 50.2
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 5.6e-95 352.1 393 53.7
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 9.5e-95 351.3 399 51.9
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 3.6e-94 349.4 405 50.6
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 4.7e-94 349.0 408 49.5
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 4.7e-94 349.0 411 49.9
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 8.1e-94 348.2 407 49.9
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.1e-93 347.8 413 48.9
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 1.8e-93 347.1 398 50.8
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 2.3e-93 346.7 407 50.4
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 3.1e-93 346.3 397 52.6
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 4.0e-93 345.9 398 50.8
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 5.2e-93 345.5 399 51.4
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 1.2e-92 344.4 410 50.2
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 3.4e-92 342.8 398 51.0
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 5.8e-92 342.0 401 49.9
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 7.5e-92 341.7 402 49.8
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 7.5e-92 341.7 418 48.8
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.7e-91 340.5 401 49.4
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 2.2e-91 340.1 409 48.7
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.4e-90 337.4 402 50.2
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 2.4e-90 336.7 399 49.9
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 7.1e-90 335.1 395 51.6
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 6.0e-89 332.0 408 48.0
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 7.8e-89 331.6 401 49.1
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 2.3e-88 330.1 402 48.3
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 3.9e-88 329.3 421 47.7
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 1.1e-87 327.8 400 48.0
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 4.3e-87 325.9 379 51.7
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 7.3e-87 325.1 410 47.3
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 3.6e-86 322.8 402 48.0
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 6.2e-86 322.0 400 49.0
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.8e-85 320.5 383 49.6
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 5.2e-85 318.9 382 49.7
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 6.8e-85 318.5 381 50.4
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 9.9e-84 314.7 386 50.3
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 2.2e-83 313.5 373 49.9
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 1.1e-82 311.2 392 47.7
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 4.1e-82 309.3 378 48.9
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 5.4e-82 308.9 415 44.8
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 2.7e-81 306.6 448 43.1
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 1.0e-80 304.7 368 49.2
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 2.3e-80 303.5 330 50.6
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 2.5e-79 300.1 336 52.1
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 6.2e-78 295.4 267 62.9
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 1.2e-76 291.2 366 47.5
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 5.8e-76 288.9 334 52.1
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.7e-75 287.3 374 48.9
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 4.9e-75 285.8 374 45.7
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 4.2e-74 282.7 381 45.9
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 5.4e-74 282.3 374 45.2
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 7.1e-74 282.0 305 54.1
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 2.1e-73 280.4 383 45.4
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 6.0e-73 278.9 378 45.0
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 7.8e-73 278.5 384 45.6
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 7.8e-73 278.5 378 43.4
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-72 277.3 373 43.2
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.9e-72 276.2 378 42.9
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 6.6e-72 275.4 400 42.2
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 6.6e-72 275.4 388 44.1
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 1.1e-71 274.6 375 43.2
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 1.5e-71 274.2 383 44.9
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 1.5e-71 274.2 397 43.1
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 1.9e-71 273.9 388 44.8
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 4.3e-71 272.7 401 42.1
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 5.6e-71 272.3 396 42.2
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 9.6e-71 271.6 378 42.9
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 1.6e-70 270.8 399 43.4
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 3.6e-70 269.6 399 43.1
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 4.8e-70 269.2 377 44.3
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 4.8e-70 269.2 373 44.2
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 6.2e-70 268.9 396 43.2
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 6.2e-70 268.9 378 42.3
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 8.1e-70 268.5 404 41.1
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 4.0e-69 266.2 396 41.7
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 6.9e-69 265.4 413 40.2
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.5e-68 264.2 398 41.7
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 1.3e-67 261.2 405 41.2
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 1.7e-67 260.8 392 43.1
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 6.4e-67 258.8 269 55.4
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 1.4e-66 257.7 373 42.4
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 5.4e-66 255.8 398 41.7
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 6.0e-65 252.3 401 39.7
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.0e-64 251.5 356 43.5
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 1.8e-64 250.8 389 39.3
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 1.1e-63 248.1 389 38.6
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 4.3e-63 246.1 406 38.9
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 5.6e-63 245.7 414 39.9
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 2.9e-59 233.4 316 42.1
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 2.1e-57 227.3 378 42.1
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 6.0e-57 225.7 400 37.8
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 8.4e-51 205.3 290 40.7
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 8.4e-51 205.3 294 40.1
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 3.2e-50 203.4 353 39.4
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 9.3e-50 201.8 350 38.6
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 1.4e-40 171.4 475 30.9
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 7.4e-39 165.6 368 32.9
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.2e-35 154.1 165 54.5
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 6.5e-35 152.5 236 37.3
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 3.0e-32 143.7 152 50.7
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 2.2e-30 137.5 160 45.6
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 8.2e-30 135.6 182 47.8
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 2.0e-28 131.0 268 36.9
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 1.8e-24 117.9 155 45.8
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 2.6e-20 104.0 149 41.6
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 5.2e-16 89.7 170 32.9
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 4.5e-12 76.6 121 37.2
Dinv30575 Davidia involucrata HOM05D008797 ORTHO05D010692 2.7e-09 67.4 235 27.7
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 5.2e-08 63.2 106 35.8
Potri.001G172300 Populus trichocarpa HOM05D008797 ORTHO05D010692 7.5e-07 59.3 201 21.4
Potri.003G062100 Populus trichocarpa HOM05D008797 ORTHO05D010692 9.8e-07 58.9 212 20.8
CSS0016456 Camellia sinensis var. sinensis HOM05D008797 ORTHO05D010692 1.7e-06 58.2 223 25.6
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 4.8e-06 56.6 71 36.6


User provided reference genes

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