Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 8.0e-258 893.3 458 100.0
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 5.3e-209 731.1 466 79.4
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.4e-206 722.2 459 79.3
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 2.6e-168 595.9 469 63.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 9.1e-161 570.9 463 61.6
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.5e-160 568.5 470 61.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.7e-159 566.6 470 61.5
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.0e-155 553.1 470 59.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 9.7e-155 550.8 464 59.1
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 3.7e-154 548.9 460 59.6
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.4e-153 547.0 462 59.5
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.4e-153 547.0 465 60.2
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.7e-151 540.0 464 58.4
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 8.5e-151 537.7 465 57.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.2e-149 533.9 464 57.3
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.7e-149 532.7 466 57.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.0e-148 530.8 496 55.2
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 9.8e-147 524.2 463 57.5
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.3e-146 523.9 463 57.2
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.7e-146 523.5 464 55.8
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 6.3e-146 521.5 465 56.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 8.3e-146 521.2 461 56.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 8.3e-146 521.2 458 57.2
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.4e-145 519.6 465 56.1
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.4e-145 519.6 465 56.1
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 7.0e-145 518.1 464 56.0
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.2e-144 517.3 465 57.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.2e-144 517.3 465 54.8
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 4.5e-144 515.4 464 55.6
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.7e-143 513.5 515 52.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.3e-143 513.1 447 56.4
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.8e-143 512.3 465 55.3
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 5.0e-143 511.9 448 56.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 6.5e-143 511.5 466 56.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.5e-142 510.4 452 56.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 5.5e-142 508.4 464 54.7
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 5.5e-142 508.4 465 54.2
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 9.5e-142 507.7 455 57.4
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.6e-141 506.9 463 55.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 6.1e-141 505.0 463 53.1
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 8.0e-141 504.6 455 54.9
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.0e-140 502.7 448 56.5
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 4.0e-140 502.3 459 55.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 1.5e-139 500.4 464 55.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.5e-139 500.4 460 53.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.6e-139 499.6 454 55.5
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.4e-139 499.2 462 54.8
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 7.5e-139 498.0 448 56.5
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 9.8e-139 497.7 464 55.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.3e-138 497.3 448 56.5
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.3e-138 497.3 466 53.0
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.7e-138 496.9 460 52.6
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.8e-138 496.1 464 55.4
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 8.3e-138 494.6 444 59.0
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.1e-137 494.2 461 54.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.1e-137 494.2 454 54.8
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.8e-137 493.4 456 55.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 3.1e-137 492.7 461 53.1
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.1e-137 492.7 461 52.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 4.1e-137 492.3 454 54.6
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 2.7e-136 489.6 456 53.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.5e-136 488.8 461 53.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 7.8e-136 488.0 455 53.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.0e-135 487.6 455 53.6
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 5.0e-135 485.3 462 52.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 6.6e-135 485.0 467 51.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 8.6e-135 484.6 447 54.6
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.1e-134 484.2 447 52.8
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.9e-134 483.4 448 52.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 3.3e-134 482.6 456 53.9
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 2.1e-133 479.9 448 52.7
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.1e-133 478.4 465 52.5
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 8.0e-133 478.0 447 53.9
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 8.0e-133 478.0 447 52.6
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 8.0e-133 478.0 455 52.3
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.0e-132 475.7 449 52.3
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 4.0e-132 475.7 446 52.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 5.2e-132 475.3 448 52.5
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 6.8e-132 474.9 464 52.2
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 8.9e-132 474.6 466 53.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 8.9e-132 474.6 494 52.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.0e-131 473.4 468 53.2
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 2.0e-131 473.4 448 51.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 2.2e-130 469.9 464 51.5
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.7e-130 469.2 423 56.3
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 7.0e-129 464.9 423 55.6
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 9.2e-129 464.5 468 52.4
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.5e-128 462.6 465 50.3
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.3e-127 460.7 431 55.0
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.1e-126 457.6 457 51.2
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.3e-126 456.1 465 49.5
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 7.3e-126 454.9 459 52.1
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.8e-125 453.0 469 50.1
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.1e-121 441.0 491 47.7
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.4e-121 440.7 464 50.2
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.7e-120 436.4 456 49.8
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.0e-119 434.5 416 52.6
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.9e-118 430.3 454 49.3
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.4e-114 415.2 456 46.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 5.4e-113 412.1 439 47.6
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 7.8e-112 408.3 458 47.6
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.2e-109 401.0 459 46.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.4e-107 392.5 459 46.2
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 3.6e-101 372.9 420 48.6
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 9.0e-92 341.7 519 41.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.5e-88 329.7 352 47.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.5e-88 329.7 352 47.2
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.1e-86 324.7 418 41.4
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 5.3e-84 315.8 303 51.2
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.0e-79 301.6 438 38.6
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 5.1e-79 299.3 479 37.4
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.4e-76 291.2 281 53.4
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 9.7e-70 268.5 464 36.9
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.4e-68 264.6 322 46.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 2.5e-57 227.3 515 31.3
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 6.1e-56 222.6 493 31.2
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.0e-46 191.0 192 47.4
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.2e-42 177.6 352 36.4
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.0e-39 168.7 473 26.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 6.7e-39 166.0 161 51.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.3e-38 163.7 161 50.3
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.0e-34 149.8 124 51.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.0e-34 149.8 124 51.6
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 8.5e-34 149.1 121 52.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.3e-31 141.0 354 30.2
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 5.2e-31 139.8 412 26.7
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.7e-29 134.8 112 57.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.7e-29 133.7 126 53.2
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 2.9e-26 124.0 445 24.7
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.1e-25 122.1 105 52.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 5.2e-23 113.2 217 35.5
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 2.9e-18 97.4 285 26.0
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.3e-17 93.6 120 41.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 7.5e-14 82.8 173 32.4
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.6e-11 75.1 73 47.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.3e-10 72.0 66 51.5
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.3e-10 72.0 66 51.5
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.2e-08 65.5 66 48.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 4.7e-08 63.5 38 73.7
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.1e-07 62.4 40 70.0
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.3e-07 61.2 39 69.2
Lsat_1_v5_gn_7_24360 Lactuca sativa HOM05D000603 ORTHO05D003510 6.8e-07 59.7 98 40.8
Zm00001eb301930 Zea mays HOM05D005294 ORTHO05D006720 1.2e-06 58.9 89 34.8


User provided reference genes

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