Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.7e-42 175.6 94 100.0
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 5.1e-26 120.9 99 71.7
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 9.6e-25 116.7 98 70.4
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 2.4e-23 112.1 92 71.7
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 4.3e-17 91.3 100 56.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 3.7e-16 88.2 99 55.6
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 8.2e-16 87.0 99 55.6
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.5e-14 81.3 98 53.1
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 4.5e-14 81.3 101 52.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 5.9e-14 80.9 72 62.5
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 5.9e-14 80.9 94 53.2
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 7.7e-14 80.5 94 53.2
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 7.7e-14 80.5 99 52.5
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.7e-13 79.3 92 57.6
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.7e-13 79.3 99 54.5
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 2.2e-13 79.0 103 52.4
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 2.9e-13 78.6 98 55.1
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 2.9e-13 78.6 102 50.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.8e-13 78.2 102 53.9
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 5.0e-13 77.8 92 54.3
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 6.5e-13 77.4 97 52.6
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.5e-13 77.4 96 55.2
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.5e-13 77.4 96 55.2
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.5e-13 77.4 98 52.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 8.5e-13 77.0 94 55.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 8.5e-13 77.0 96 47.9
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 8.5e-13 77.0 99 54.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 8.5e-13 77.0 99 52.5
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 8.5e-13 77.0 103 55.3
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 8.5e-13 77.0 95 52.6
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.1e-12 76.6 103 54.4
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.4e-12 76.3 93 51.6
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.4e-12 76.3 99 50.5
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.4e-12 76.3 93 52.7
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.9e-12 75.9 102 55.9
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.9e-12 75.9 97 53.6
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.9e-12 75.9 103 53.4
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 2.5e-12 75.5 99 50.5
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.2e-12 75.1 99 48.5
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.2e-12 75.1 95 52.6
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.2e-12 75.1 103 53.4
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 4.2e-12 74.7 99 52.5
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 4.2e-12 74.7 93 53.8
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 5.5e-12 74.3 87 54.0
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.5e-12 74.3 93 53.8
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 5.5e-12 74.3 99 51.5
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 9.4e-12 73.6 94 55.3
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.6e-11 72.8 99 55.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.6e-11 72.8 47 76.6
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.1e-11 72.4 96 52.1
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.1e-11 72.4 101 46.5
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 3.6e-11 71.6 99 46.5
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 3.6e-11 71.6 92 50.0
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 3.6e-11 71.6 101 47.5
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 4.6e-11 71.2 99 52.5
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 4.6e-11 71.2 94 52.1
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 6.1e-11 70.9 89 52.8
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 7.9e-11 70.5 90 56.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 7.9e-11 70.5 97 50.5
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 7.9e-11 70.5 91 47.3
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.0e-10 70.1 93 52.7
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 1.4e-10 69.7 98 48.0
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.8e-10 69.3 98 49.0
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.3e-10 68.9 90 46.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.3e-10 68.9 96 49.0
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.9e-10 68.2 103 49.5
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 5.1e-10 67.8 98 48.0
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 6.7e-10 67.4 88 50.0
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.5e-09 66.2 88 54.5
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.0e-09 65.9 98 51.0
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 3.3e-09 65.1 93 46.2
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 3.3e-09 65.1 61 63.9
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 3.3e-09 65.1 95 53.7
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 5.7e-09 64.3 92 50.0
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.4e-09 63.9 58 62.1
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 9.7e-09 63.5 94 46.8
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 9.7e-09 63.5 95 45.3
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.7e-08 62.8 97 45.4
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.2e-08 62.4 88 45.5
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 2.8e-08 62.0 95 47.4
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 4.8e-08 61.2 91 50.5
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 8.2e-08 60.5 95 47.4
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 8.2e-08 60.5 95 47.4
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 8.2e-08 60.5 94 47.9
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.4e-07 59.7 95 44.2
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.4e-07 58.9 94 41.5
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 3.1e-07 58.5 100 44.0
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 3.1e-07 58.5 100 44.0
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 3.1e-07 58.5 100 44.0
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.1e-07 58.5 98 42.9
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-07 58.5 97 43.3
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-07 58.5 97 43.3
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 3.1e-07 58.5 96 44.8
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 4.1e-07 58.2 60 51.7
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 5.3e-07 57.8 100 43.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 5.3e-07 57.8 85 45.9
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 5.3e-07 57.8 100 43.0
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 6.9e-07 57.4 96 43.8
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.2e-06 56.6 88 45.5
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.2e-06 56.6 86 46.5
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.5e-06 56.2 87 51.7
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 1.5e-06 56.2 92 40.2
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.0e-06 55.8 103 38.8
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 2.0e-06 55.8 88 39.8
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.4e-06 55.1 88 42.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.5e-06 54.7 92 44.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.9e-06 54.3 94 42.6
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 7.7e-06 53.9 83 45.8
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 7.7e-06 53.9 88 47.7
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 7.7e-06 53.9 92 44.6
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 7.7e-06 53.9 83 44.6


User provided reference genes

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