Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.0e-274 948.0 508 100.0
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.1e-234 816.6 457 88.0
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 8.1e-227 790.4 427 89.7
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 6.7e-213 744.2 456 80.0
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 7.1e-207 724.2 456 76.5
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.3e-205 719.2 461 80.9
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 4.8e-203 711.4 452 76.5
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.4e-202 709.9 451 77.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.1e-202 708.8 421 80.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.2e-201 706.8 439 77.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.2e-201 706.8 454 76.4
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 3.4e-201 705.3 439 77.2
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.4e-201 705.3 431 78.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.5e-201 704.9 451 75.8
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 4.9e-200 701.4 455 75.2
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 8.4e-200 700.7 421 79.1
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.1e-199 700.3 424 78.3
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.9e-199 699.5 457 74.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.2e-199 698.4 460 74.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 5.5e-199 698.0 424 78.1
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.3e-197 693.3 441 76.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.8e-197 693.0 444 74.3
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 3.0e-197 692.2 441 76.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.0e-197 692.2 439 76.1
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 5.1e-197 691.4 424 77.4
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 6.7e-197 691.0 429 76.2
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.9e-196 689.5 421 77.9
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.5e-196 689.1 452 72.1
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.5e-196 689.1 455 73.2
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 7.4e-196 687.6 428 76.6
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 9.7e-196 687.2 440 75.0
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.6e-195 686.4 455 73.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.6e-195 686.4 432 76.6
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 2.2e-195 686.0 449 74.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 3.7e-195 685.3 435 75.6
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.8e-195 684.9 433 76.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 1.8e-194 682.9 442 74.4
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.1e-194 682.2 441 74.8
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 4.1e-194 681.8 430 75.8
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 6.9e-194 681.0 438 75.1
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 7.7e-193 677.6 440 74.1
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.9e-192 675.6 396 80.6
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.8e-192 675.2 446 71.7
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.8e-192 675.2 446 73.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.5e-192 674.5 431 74.0
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 8.5e-192 674.1 436 76.1
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.1e-191 673.7 421 76.2
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-191 673.7 462 73.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.1e-191 673.7 456 72.6
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.1e-191 673.7 561 62.4
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.4e-191 673.3 464 71.8
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 4.2e-191 671.8 454 73.1
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.2e-191 671.8 445 73.0
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 5.5e-191 671.4 458 72.7
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 7.2e-191 671.0 445 73.0
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 9.4e-191 670.6 439 73.6
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.6e-190 669.8 445 73.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 2.7e-190 669.1 457 70.7
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.1e-190 667.9 439 72.9
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.0e-189 667.2 439 73.1
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.9e-189 665.2 452 70.6
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.5e-188 663.3 463 70.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.0e-188 662.9 449 71.3
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.3e-187 660.2 435 72.4
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.7e-187 659.8 437 73.7
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.1e-186 655.6 424 74.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 2.0e-185 652.9 460 69.8
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.6e-185 652.5 432 72.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.4e-185 652.1 460 69.8
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 5.9e-185 651.4 420 75.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 5.9e-185 651.4 420 75.2
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 5.9e-185 651.4 449 71.5
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 7.7e-185 651.0 460 69.6
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.0e-184 650.6 442 71.9
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.0e-184 650.6 442 71.9
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.7e-184 649.8 442 71.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 2.2e-184 649.4 422 74.4
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 2.2e-184 649.4 422 74.4
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.9e-184 649.0 422 73.9
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.9e-184 649.0 431 73.3
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.1e-183 647.1 438 71.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.9e-183 646.4 493 66.9
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.5e-183 646.0 434 72.6
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 4.2e-183 645.2 442 69.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 4.2e-183 645.2 442 71.7
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-182 643.7 422 73.9
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.1e-182 642.9 422 73.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.0e-181 640.6 440 71.6
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.0e-181 640.6 440 71.6
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.8e-181 639.8 447 71.1
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.8e-181 639.8 428 73.4
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.8e-181 639.8 428 73.4
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.8e-181 639.8 428 73.4
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 8.8e-181 637.5 418 73.4
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.3e-179 631.3 424 73.3
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.4e-178 629.4 424 73.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.1e-178 629.0 391 76.2
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 7.0e-178 627.9 456 68.4
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-177 626.3 424 72.9
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.5e-177 625.2 424 71.9
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 8.5e-176 620.9 408 76.5
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 5.5e-175 618.2 420 73.6
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.1e-174 616.3 435 70.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.7e-174 615.1 424 73.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 6.7e-173 611.3 411 71.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.7e-171 606.7 490 63.3
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.8e-171 605.9 447 68.5
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 8.5e-168 594.3 419 66.1
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.9e-167 593.2 424 68.9
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.0e-165 587.4 395 73.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 2.0e-164 583.2 455 66.6
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 3.3e-164 582.4 368 74.2
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.8e-163 579.3 435 62.5
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.4e-162 577.0 552 58.3
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 7.0e-162 574.7 502 60.2
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.2e-160 569.7 425 68.2
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 5.0e-160 568.5 417 66.7
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.2e-159 565.8 388 72.4
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.2e-159 565.5 464 59.1
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.7e-158 562.8 469 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.4e-157 560.5 422 62.6
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.2e-157 558.5 472 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.8e-157 557.8 422 61.8
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.0e-156 556.6 431 64.5
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 2.8e-155 552.7 457 62.6
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.8e-154 550.1 355 74.9
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 5.5e-151 538.5 419 64.7
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 9.8e-148 527.7 453 62.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-145 519.6 408 64.2
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.9e-145 518.5 355 72.4
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.0e-144 517.7 368 66.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.6e-142 510.4 476 58.2
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.6e-142 509.2 424 63.7
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 6.8e-141 505.0 401 62.8
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 7.5e-140 501.5 354 68.1
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 9.8e-140 501.1 342 74.0
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.7e-139 499.2 362 68.8
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.7e-139 499.2 409 63.3
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.4e-138 497.3 330 73.3
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 9.2e-138 494.6 311 77.5
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.7e-137 493.0 479 57.6
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 8.6e-136 488.0 333 71.5
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.2e-133 478.8 331 71.6
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 6.4e-131 471.9 480 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.3e-119 433.0 351 59.8
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.9e-115 419.9 289 70.6
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 9.6e-111 404.8 311 66.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 9.0e-109 398.3 290 69.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 8.7e-96 355.1 210 78.1
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.3e-95 353.2 437 46.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.7e-73 280.4 233 63.1
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 9.7e-71 271.9 144 82.6
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.7e-70 271.2 222 64.4
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 7.4e-63 245.7 193 59.6
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 8.2e-62 242.3 202 63.9
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.8e-61 241.1 166 63.3
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 7.0e-61 239.2 155 74.8
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 7.7e-60 235.7 409 34.5
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.2e-59 234.2 278 51.4
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.4e-58 228.8 424 37.3
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.8e-48 198.0 152 67.1
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.7e-47 193.0 492 30.5
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.9e-44 183.0 101 80.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.9e-19 100.5 265 30.6
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 6.6e-19 99.8 175 36.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 8.6e-19 99.4 49 87.8
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 6.8e-16 89.7 51 78.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 8.9e-16 89.4 48 81.2
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 8.9e-16 89.4 122 50.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 9.5e-10 69.3 106 38.7
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.4e-08 65.5 38 76.3
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 3.4e-07 60.8 63 46.0


User provided reference genes

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