Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.3e-264 914.4 455 100.0
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.1e-259 899.4 455 98.5
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 1.2e-224 783.1 450 86.4
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.7e-212 742.7 450 82.4
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 3.9e-204 714.9 450 78.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 6.2e-202 707.6 454 76.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.8e-201 706.1 473 75.1
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.6e-200 702.2 484 73.1
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.4e-200 701.4 455 75.4
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 4.4e-200 701.4 454 74.4
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 7.6e-200 700.7 456 76.1
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.2e-199 699.1 453 75.7
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 3.8e-199 698.4 453 76.2
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 8.4e-199 697.2 453 75.5
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.1e-198 696.8 450 74.9
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.2e-198 695.3 454 76.7
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 3.2e-198 695.3 450 75.1
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.2e-198 695.3 455 74.7
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.1e-198 694.9 451 75.4
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 7.1e-198 694.1 453 75.3
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 9.2e-198 693.7 453 74.8
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 1.2e-197 693.3 454 74.9
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 2.1e-197 692.6 447 76.3
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 4.6e-197 691.4 455 74.7
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 4.6e-197 691.4 451 75.2
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 1.7e-196 689.5 479 71.0
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.7e-196 689.5 435 76.1
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.7e-196 689.5 452 75.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.0e-196 688.7 452 75.2
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.9e-196 688.3 454 75.3
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 3.9e-196 688.3 417 80.1
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 5.1e-196 688.0 450 74.0
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 5.6e-195 684.5 451 75.2
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 7.3e-195 684.1 449 73.9
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 9.6e-195 683.7 450 74.4
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 9.6e-195 683.7 456 72.1
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.6e-194 682.9 456 72.4
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 2.1e-194 682.6 435 75.6
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 4.7e-194 681.4 432 75.5
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 1.1e-193 680.2 456 71.7
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.1e-193 680.2 451 74.9
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.8e-193 679.5 451 74.5
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.8e-193 679.5 454 73.1
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 3.1e-193 678.7 453 72.0
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 5.2e-193 677.9 456 71.5
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 4.4e-192 674.9 450 72.4
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 4.4e-192 674.9 455 73.0
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 1.3e-191 673.3 453 74.0
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.9e-191 672.2 442 72.4
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.9e-191 672.2 456 70.6
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 3.8e-191 671.8 456 71.1
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 3.8e-191 671.8 460 71.5
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.4e-190 669.8 449 74.6
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.4e-190 669.1 459 72.3
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.2e-190 668.7 456 72.8
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 3.2e-190 668.7 457 71.6
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 3.2e-190 668.7 454 72.5
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 4.2e-190 668.3 454 72.7
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 5.4e-190 667.9 432 75.2
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 9.3e-190 667.2 449 71.9
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 9.3e-190 667.2 450 72.4
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 9.3e-190 667.2 457 72.0
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 9.3e-190 667.2 450 71.1
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.2e-189 666.8 458 72.7
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.2e-189 666.8 457 71.8
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.0e-188 663.7 456 71.3
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 5.1e-188 661.4 450 71.3
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 5.1e-188 661.4 470 69.1
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 6.6e-188 661.0 450 71.1
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 8.7e-188 660.6 450 70.9
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 3.3e-187 658.7 450 70.7
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.6e-186 655.2 470 68.5
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 3.6e-186 655.2 456 68.0
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.4e-185 653.3 454 69.6
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.8e-185 652.9 479 67.4
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 2.4e-185 652.5 453 70.2
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 9.0e-185 650.6 454 67.0
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 2.0e-184 649.4 452 70.1
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 5.8e-184 647.9 448 69.6
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.3e-183 646.7 453 70.0
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 2.2e-183 646.0 469 67.4
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 3.8e-183 645.2 461 68.3
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 6.4e-183 644.4 455 69.7
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.1e-182 643.7 450 71.3
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 2.7e-181 639.0 463 69.8
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.7e-181 639.0 450 69.1
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.8e-180 636.3 460 68.0
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 8.7e-180 634.0 504 66.3
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.5e-179 633.3 453 70.0
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.9e-179 632.9 483 67.9
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 1.6e-178 629.8 460 65.7
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 7.9e-173 610.9 449 66.8
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.3e-170 603.6 486 63.0
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.6e-170 603.2 409 73.1
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.1e-170 602.8 415 70.4
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 2.4e-169 599.4 414 70.8
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 7.9e-165 584.3 389 69.7
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 2.3e-164 582.8 408 69.4
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.2e-160 570.5 363 75.5
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 3.4e-160 568.9 450 64.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 7.6e-160 567.8 465 62.6
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.1e-157 559.7 467 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.0e-156 555.8 426 61.7
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.5e-155 553.5 428 61.2
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.7e-154 550.1 450 62.9
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.4e-150 537.0 430 58.6
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 6.1e-149 531.6 430 59.8
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 5.3e-145 518.5 442 55.7
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.0e-144 516.5 319 78.7
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 3.5e-128 462.6 277 78.7
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 4.5e-128 462.2 456 56.8
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 4.1e-113 412.5 434 46.1
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 2.8e-109 399.8 435 48.5
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 5.8e-107 392.1 450 51.3
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.2e-91 341.3 315 56.8
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.9e-89 334.0 369 50.4
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.0e-87 328.2 513 37.0
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 4.3e-86 322.8 182 84.1
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.3e-55 220.7 336 40.8
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 5.6e-54 216.1 108 89.8
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 4.8e-53 213.0 190 60.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 4.2e-49 199.9 370 37.0
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 1.1e-41 175.3 389 33.2
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 4.6e-40 169.9 124 70.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.0e-35 154.5 137 59.9
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 5.0e-34 149.8 124 65.3
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.6e-30 137.5 104 65.4
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 7.4e-30 136.0 83 69.9
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 4.1e-28 130.2 120 55.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 5.2e-23 113.2 53 90.6
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 2.6e-22 110.9 67 71.6
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 1.3e-21 108.6 192 33.3
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 3.1e-20 104.0 74 66.2
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 3.2e-17 94.0 66 68.2
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 6.1e-16 89.7 141 42.6
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 3.4e-14 84.0 102 50.0
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 3.5e-11 73.9 70 50.0
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.9e-10 70.9 52 71.2


User provided reference genes

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