Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 2022.7 1077 100.0
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1826.6 1077 89.5
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1761.1 1106 85.9
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1612.8 1088 77.4
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1573.5 1088 75.6
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1568.9 1089 77.1
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1566.6 1089 76.8
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1563.9 1090 77.0
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1560.4 1087 75.3
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1560.4 1108 74.2
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1078 76.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1522.7 1085 75.4
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1516.5 977 77.8
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1516.1 1103 74.3
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1514.6 1086 73.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1513.8 1087 75.1
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1508.8 1085 72.7
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1508.0 1096 73.7
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1506.1 1085 73.5
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1504.6 1089 73.5
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1502.6 1086 74.5
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1498.0 1089 72.4
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1497.3 1088 73.3
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1494.2 1088 72.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1493.0 1087 72.9
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1491.5 1070 73.5
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1086 73.7
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1488.8 1086 72.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1488.4 1085 73.2
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1486.1 1082 72.6
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1484.5 1087 73.4
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1483.4 1065 73.7
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1482.6 1088 73.1
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1481.1 1086 71.8
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1479.9 1086 72.2
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1479.9 1086 72.2
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1476.8 1085 71.2
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1472.2 1085 72.7
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1470.7 1084 71.2
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1467.2 1091 74.3
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1465.7 1086 71.8
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1458.7 1087 71.8
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1450.3 1089 72.8
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1448.7 1095 71.1
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1448.0 1087 71.6
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1447.2 1086 72.7
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1444.9 1078 71.2
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 1086 71.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1442.9 1128 71.1
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1439.1 1127 69.3
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1438.7 1127 69.3
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1435.2 879 80.1
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1432.2 1082 71.3
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 1082 71.1
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1428.7 1116 69.8
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1427.9 1086 70.4
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1427.9 1090 70.8
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1427.5 881 78.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1427.2 881 78.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1087 69.8
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1101 71.3
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1051 71.6
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1424.1 1086 70.3
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 1094 71.6
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1422.9 1053 72.7
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1422.1 881 78.5
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1421.0 1090 70.7
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1420.2 1076 71.7
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1417.5 1009 72.6
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1412.1 1051 72.8
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1411.4 1084 69.4
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1406.0 958 73.5
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1403.7 1088 69.9
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1398.6 958 72.2
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1397.9 1192 65.5
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1395.6 958 71.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1384.8 1116 68.4
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1384.4 958 71.9
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1384.4 958 71.9
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1383.2 958 71.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1378.2 1078 69.4
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 991 71.0
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 1032 72.9
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1374.4 1080 68.1
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1373.6 1108 67.3
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1369.8 1069 67.9
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1366.3 881 76.6
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1359.7 1247 61.5
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1072 67.9
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1355.5 1077 67.4
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1342.8 1089 68.8
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1335.5 1077 67.1
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1323.5 1041 65.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1313.9 1089 67.9
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1311.6 1203 60.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1299.6 911 72.8
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1272.7 937 70.5
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1227.6 1078 60.6
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1198.7 953 64.4
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1198.0 892 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1123.2 955 60.1
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1122.8 693 79.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1121.7 777 72.8
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1095.1 1085 59.3
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.8e-276 956.4 756 62.0
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.6e-275 952.6 691 70.8
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 1.8e-271 939.9 647 73.3
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 8.4e-266 921.0 558 81.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.8e-244 850.1 640 67.5
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-193 681.4 583 61.7
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 9.3e-172 608.6 518 69.9
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.3e-161 573.5 445 65.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 7.4e-153 545.8 318 83.0
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 6.7e-130 469.5 388 73.7
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 3.4e-126 457.2 368 60.3
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.0e-125 455.7 450 57.1
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 3.3e-121 440.7 391 70.8
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 3.6e-91 340.9 322 56.2
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 7.0e-87 326.6 1097 27.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 8.6e-85 319.7 288 59.0
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-84 318.5 298 56.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-81 309.3 256 60.9
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 4.9e-80 303.9 1052 27.1
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-79 300.8 207 72.0
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 9.2e-63 246.5 190 64.2
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-58 232.3 385 37.9
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 4.4e-57 227.6 134 80.6
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.3e-55 219.9 145 71.0
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.5e-46 191.4 217 51.2
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.3e-45 188.7 99 87.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.9e-45 188.0 107 86.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.9e-44 185.7 100 88.0
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.4e-40 170.6 108 75.0
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 8.4e-40 170.2 251 44.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.9e-39 169.1 149 58.4
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 3.2e-39 168.3 237 39.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.0e-34 151.4 272 37.1
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-33 149.8 89 78.7
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.2e-33 149.8 121 64.5
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 8.4e-32 143.7 249 38.6
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.4e-32 143.7 119 61.3
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.2e-31 141.7 93 77.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-27 129.8 155 47.1
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 8.2e-27 127.1 155 46.5
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 2.6e-25 122.1 276 37.0
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.4e-25 121.7 108 60.2
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.4e-25 121.7 108 60.2
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.4e-25 121.7 108 60.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.9e-23 115.9 91 62.6
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.5e-23 114.4 83 69.9
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.3e-23 113.6 84 69.0
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-21 109.8 79 67.1
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 4.3e-20 104.8 97 64.9
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-19 103.2 61 78.7
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-19 103.2 59 83.1
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.8e-19 101.3 61 72.1
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.5e-17 96.3 67 67.2
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.4e-15 89.7 79 55.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 5.5e-15 87.8 47 93.6
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 8.8e-13 80.5 49 79.6
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.7e-12 77.0 73 53.4
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.7e-11 75.1 182 34.1
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.9e-10 70.9 58 58.6
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 2.0e-09 69.3 77 58.4
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.5e-09 68.2 75 50.7
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.0e-08 67.0 66 51.5
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 5.0e-08 64.7 75 46.7
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 6.5e-08 64.3 86 48.8
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.1e-07 63.5 76 46.1
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 4.2e-07 61.6 76 44.7
SEGI_17061 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-06 60.1 45 60.0
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 3.6e-06 58.5 51 58.8
HPP92_028551 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.9e-06 57.4 122 32.8


User provided reference genes

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