Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353911 Helianthus annuus HOM05D007162 ORTHO05D007631 5.3e-130 467.6 226 100.0
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 5.6e-95 351.3 364 53.3
MSTRG.10171 Avicennia marina HOM05D007162 ORTHO05D007631 1.6e-70 270.0 363 41.6
Cfa015679 Carpinus fangiana HOM05D007162 ORTHO05D007631 1.9e-66 256.5 356 41.6
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 7.1e-66 254.6 357 42.3
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 1.0e-64 250.8 358 40.8
Oeu046586.1 Olea europaea HOM05D007162 ORTHO05D007631 1.0e-64 250.8 351 39.9
CAN.G484.72 Capsicum annuum HOM05D007162 ORTHO05D007631 1.3e-64 250.4 363 40.2
Sopen12g033850 Solanum pennellii HOM05D007162 ORTHO05D007631 1.8e-64 250.0 363 39.1
PGSC0003DMG400004614 Solanum tuberosum HOM05D007162 ORTHO05D007631 1.8e-64 250.0 363 39.4
Nitab4.5_0002150g0050 Nicotiana tabacum HOM05D007162 ORTHO05D007631 3.0e-64 249.2 356 40.2
Prupe.1G112700 Prunus persica HOM05D007162 ORTHO05D007631 3.9e-64 248.8 357 40.9
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 8.7e-64 247.7 351 41.6
Actinidia18474 Actinidia chinensis HOM05D007162 ORTHO05D007631 1.9e-63 246.5 355 38.6
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 1.9e-63 246.5 354 39.0
CiPaw.01G134400 Carya illinoinensis HOM05D007162 ORTHO05D007631 4.3e-63 245.4 356 41.3
Manes.03G207900 Manihot esculenta HOM05D007162 ORTHO05D007631 7.4e-63 244.6 362 39.2
Hma1.2p1_0013F.1_g008260 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 9.6e-63 244.2 358 38.3
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 1.6e-62 243.4 356 40.2
Rhsim04G0242300 Rhododendron simsii HOM05D007162 ORTHO05D007631 1.6e-62 243.4 357 39.5
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 6.2e-62 241.5 359 39.0
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 6.2e-62 241.5 361 39.1
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 8.1e-62 241.1 354 38.4
Lj6P694T44 Lonicera japonica HOM05D007162 ORTHO05D007631 1.1e-61 240.7 182 64.3
Hma1.2p1_0516F.1_g170520 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 1.4e-61 240.4 357 38.7
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 1.8e-61 240.0 359 39.0
Medtr2g033410 Medicago truncatula HOM05D007162 ORTHO05D007631 2.4e-61 239.6 356 39.6
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 5.3e-61 238.4 355 39.2
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 5.3e-61 238.4 355 39.2
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 6.9e-61 238.0 353 38.2
FvH4_4g20690 Fragaria vesca HOM05D007162 ORTHO05D007631 1.5e-60 236.9 359 38.4
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 1.5e-60 236.9 355 37.5
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 1.5e-60 236.9 360 38.1
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 2.6e-60 236.1 352 38.6
TPR.G33885 Trifolium pratense HOM05D007162 ORTHO05D007631 2.6e-60 236.1 356 38.8
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 5.8e-60 235.0 354 37.9
FAN12G3043 Fragaria x ananassa HOM05D007162 ORTHO05D007631 1.7e-59 233.4 359 39.0
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.7e-59 233.4 351 38.5
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 1.7e-59 233.4 351 38.5
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 1.7e-59 233.4 356 39.3
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 2.2e-59 233.0 362 38.1
Glyma.09G032600 Glycine max HOM05D007162 ORTHO05D007631 2.9e-59 232.6 159 66.0
Carub.0008s0947 Capsella rubella HOM05D007162 ORTHO05D007631 3.8e-59 232.3 352 37.8
Lalb_Chr18g0058531 Lupinus albus HOM05D007162 ORTHO05D007631 4.9e-59 231.9 355 38.6
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 6.5e-59 231.5 354 37.6
CANSAT78G1184 Cannabis sativa HOM05D007162 ORTHO05D007631 8.4e-59 231.1 356 40.7
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 8.4e-59 231.1 355 37.2
AL8G23420 Arabidopsis lyrata HOM05D007162 ORTHO05D007631 1.1e-58 230.7 352 37.5
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.1e-58 230.7 351 37.6
AUR62032772 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.9e-58 229.9 274 44.5
Nitab4.5_0002294g0120 Nicotiana tabacum HOM05D007162 ORTHO05D007631 4.2e-58 228.8 159 65.4
DCAR_023374 Daucus carota HOM05D007162 ORTHO05D007631 5.5e-58 228.4 155 66.5
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 5.5e-58 228.4 356 37.4
Sabra10G0115000 Salix brachista HOM05D007162 ORTHO05D007631 5.5e-58 228.4 362 37.3
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 5.5e-58 228.4 354 37.0
Solyc12g099170.3 Solanum lycopersicum HOM05D007162 ORTHO05D007631 7.1e-58 228.0 159 64.8
EL10Ac3g05554 Beta vulgaris HOM05D007162 ORTHO05D007631 9.3e-58 227.6 360 36.9
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 1.2e-57 227.3 359 37.0
Duzib212G0788 Durio zibethinus HOM05D007162 ORTHO05D007631 1.6e-57 226.9 345 38.0
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 2.1e-57 226.5 359 36.8
Lj6g0014268 Lotus japonicus HOM05D007162 ORTHO05D007631 2.1e-57 226.5 157 63.7
Peaxi162Scf01160g00150 Petunia axillaris HOM05D007162 ORTHO05D007631 2.1e-57 226.5 159 64.8
Ciclev10005014m.g Citrus clementina HOM05D007162 ORTHO05D007631 3.5e-57 225.7 356 38.8
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 4.6e-57 225.3 360 35.8
Glyma.15G137700 Glycine max HOM05D007162 ORTHO05D007631 6.0e-57 224.9 159 65.4
Psat1g162520 Pisum sativum HOM05D007162 ORTHO05D007631 6.0e-57 224.9 159 62.9
BraA02t08804Z Brassica rapa HOM05D007162 ORTHO05D007631 1.8e-56 223.4 351 36.5
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.8e-56 223.4 354 36.7
Sc13g0007060 Simmondsia chinensis HOM05D007162 ORTHO05D007631 5.1e-56 221.9 355 36.3
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 6.7e-56 221.5 351 36.5
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 6.7e-56 221.5 354 37.0
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 8.7e-56 221.1 356 36.0
Lalb_Chr15g0089091 Lupinus albus HOM05D007162 ORTHO05D007631 8.7e-56 221.1 157 63.1
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 1.1e-55 220.7 351 37.0
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 2.5e-55 219.5 351 37.0
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 2.5e-55 219.5 351 37.0
Gohir.A01G035600 Gossypium hirsutum HOM05D007162 ORTHO05D007631 4.3e-55 218.8 356 36.2
TWI09G0041 Tripterygium wilfordii HOM05D007162 ORTHO05D007631 4.3e-55 218.8 153 68.0
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 7.4e-55 218.0 356 35.7
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 9.6e-55 217.6 354 35.3
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 1.3e-54 217.2 354 36.7
MD16G1149000 Malus domestica HOM05D007162 ORTHO05D007631 1.6e-54 216.9 159 64.2
Atru.chr4.3114 Acer truncatum HOM05D007162 ORTHO05D007631 2.8e-54 216.1 162 64.2
PSO170G0624 Papaver somniferum HOM05D007162 ORTHO05D007631 1.4e-53 213.8 356 35.4
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 2.0e-52 209.9 351 35.6
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 1.9e-47 193.4 337 35.3
GSVIVG01034950001 Vitis vinifera HOM05D007162 ORTHO05D007631 2.8e-46 189.5 135 64.4
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 2.9e-43 179.5 311 35.4
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 2.9e-43 179.5 311 35.4
HPP92_017256 Vanilla planifolia HOM05D007162 ORTHO05D007631 5.5e-42 175.3 198 44.4
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 1.6e-41 173.7 315 35.9
MBI19_g03280_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 3.6e-41 172.6 343 32.9
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 1.3e-38 164.1 314 34.4
AUR62022433 Chenopodium quinoa HOM05D007162 ORTHO05D007631 8.2e-38 161.4 122 62.3
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 4.5e-36 155.6 153 48.4
Cc03_g00510 Coffea canephora HOM05D007162 ORTHO05D007631 9.7e-31 137.9 283 35.3
Oeu004105.1 Olea europaea HOM05D007162 ORTHO05D007631 2.1e-25 120.2 133 47.4
Dinv15135 Davidia involucrata HOM05D007162 ORTHO05D007631 3.7e-14 82.8 69 56.5
Ah.07g201630 Amaranthus hybridus HOM05D007162 ORTHO05D007631 7.0e-13 78.6 241 24.5
TAR362G1081 Trochodendron aralioides HOM05D007162 ORTHO05D007631 7.7e-12 75.1 72 51.4
Actinidia29354 Actinidia chinensis HOM05D000007 ORTHO05D000039 5.0e-11 72.4 231 23.8
EL10Ac1g01146 Beta vulgaris HOM05D007162 ORTHO05D007631 1.1e-10 71.2 76 43.4
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 5.5e-10 68.9 146 28.8
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.2e-10 68.6 94 29.8
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 1.4e-08 64.3 124 27.4
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.4e-08 64.3 124 27.4
Os04g0193300 Oryza sativa ssp. japonica HOM05D011488 ORTHO05D013340 4.0e-08 62.8 131 35.9
Medtr3g437520 Medicago truncatula HOM05D000007 ORTHO05D000017 8.8e-08 61.6 151 31.8
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.5e-07 60.8 94 30.9
TAR185G0002 Trochodendron aralioides HOM05D008437 ORTHO05D008819 1.5e-07 60.8 212 28.3
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.5e-07 60.8 94 30.9
Medtr0464s0020 Medicago truncatula HOM05D000007 ORTHO05D000017 2.6e-07 60.1 150 31.3
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.4e-07 59.7 136 27.2
Medtr7g060940 Medicago truncatula HOM05D000007 ORTHO05D000017 5.7e-07 58.9 72 40.3
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.5e-07 58.5 95 29.5
TPR.G23712 Trifolium pratense HOM05D000007 ORTHO05D000017 1.3e-06 57.8 61 49.2
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.3e-06 57.8 95 28.4
ECA238G0023 Erigeron canadensis HOM05D012740 ORTHO05D010577 1.7e-06 57.4 125 26.4
Medtr2g043410 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-06 57.0 58 48.3
PSO832G2394 Papaver somniferum HOM05D003814 ORTHO05D004399 2.2e-06 57.0 99 30.3
TPR.G33673 Trifolium pratense HOM05D000007 ORTHO05D000017 2.2e-06 57.0 65 43.1
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.2e-06 57.0 112 32.1
Nn2g13599 Nelumbo nucifera HOM05D008437 ORTHO05D008819 2.8e-06 56.6 157 29.3
TAR624G0077 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.8e-06 56.6 89 29.2
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.8e-06 56.6 89 29.2
ATR1048G001 Amborella trichopoda HOM05D007162 ORTHO05D007631 3.7e-06 56.2 65 46.2
Psat3g146240 Pisum sativum HOM05D000007 ORTHO05D000017 3.7e-06 56.2 76 36.8
Thecc.10G092800 Theobroma cacao HOM05D000007 ORTHO05D000039 3.7e-06 56.2 70 41.4
arahy.Tifrunner.gnm1.ann1.PR6200 Arachis hypogaea HOM05D000007 ORTHO05D000017 4.9e-06 55.8 155 27.1
FAN15G3677 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.9e-06 55.8 169 27.2
FAN25G0265 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-06 55.8 176 25.6
FAN25G0935 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-06 55.8 176 25.6
FAN26G0221 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.9e-06 55.8 160 26.2
QL02p081705 Quercus lobata HOM05D000007 ORTHO05D000039 4.9e-06 55.8 66 43.9
QL07p003540 Quercus lobata HOM05D000007 ORTHO05D000039 4.9e-06 55.8 131 28.2
TPR.G29654 Trifolium pratense HOM05D000007 ORTHO05D000017 4.9e-06 55.8 78 44.9
Lj1g0005824 Lotus japonicus HOM05D000007 ORTHO05D000017 6.3e-06 55.5 192 28.6
PSO017G7120 Papaver somniferum HOM05D000007 ORTHO05D000017 6.3e-06 55.5 59 49.2
Peaxi162Scf00583g00110 Petunia axillaris HOM05D000007 ORTHO05D000521 6.3e-06 55.5 56 50.0
QL07p008890 Quercus lobata HOM05D000007 ORTHO05D000039 6.3e-06 55.5 165 28.5
QL09p021305 Quercus lobata HOM05D000007 ORTHO05D000039 6.3e-06 55.5 45 57.8
QL09p021311 Quercus lobata HOM05D000007 ORTHO05D000039 6.3e-06 55.5 47 51.1
arahy.Tifrunner.gnm1.ann1.N9LGBL Arachis hypogaea HOM05D000007 ORTHO05D000017 8.3e-06 55.1 155 27.1
Medtr7g056003 Medicago truncatula HOM05D000007 ORTHO05D000017 8.3e-06 55.1 61 49.2
Medtr7g056390 Medicago truncatula HOM05D000007 ORTHO05D000017 8.3e-06 55.1 64 48.4


User provided reference genes

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