Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 0.0e+00 1798.1 938 100.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 0.0e+00 1224.2 953 67.6
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 9.8e-303 1043.5 956 63.1
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 2.3e-299 1032.3 946 60.1
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.8e-227 793.5 1010 48.9
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 4.1e-192 676.0 1002 44.0
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 4.5e-191 672.5 992 44.2
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 3.8e-190 669.5 1027 42.5
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 3.8e-190 669.5 1004 44.8
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 6.8e-187 658.7 1022 43.6
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 7.0e-184 648.7 1021 43.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 8.6e-182 641.7 978 43.4
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.1e-181 641.3 987 43.0
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.9e-181 640.6 975 42.1
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 5.6e-181 639.0 975 42.2
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 7.3e-181 638.6 991 42.5
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.2e-180 637.9 979 43.1
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 3.6e-180 636.3 1005 42.8
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.2e-178 631.3 1018 43.6
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.5e-178 630.9 999 41.8
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 1.9e-176 624.0 1017 40.9
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 4.6e-175 619.4 982 43.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 7.8e-175 618.6 984 42.2
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 6.6e-174 615.5 1017 42.7
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.1e-173 614.8 1016 42.7
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 5.2e-171 605.9 871 44.2
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 7.5e-170 602.1 978 41.5
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 9.9e-170 601.7 1007 42.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 9.9e-170 601.7 1019 42.0
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 6.4e-169 599.0 1016 42.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.2e-167 594.7 1022 41.5
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 1.0e-166 591.7 1007 41.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.3e-166 590.5 1016 42.1
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.5e-165 587.8 1015 41.7
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 2.5e-165 587.0 988 40.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.8e-164 583.6 1024 42.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.6e-162 577.0 1006 40.7
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.8e-159 565.5 1005 40.5
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.0e-158 563.5 1013 39.9
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.9e-158 563.1 1015 41.1
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 5.1e-158 562.8 1070 40.2
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 8.7e-158 562.0 1010 39.7
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.5e-157 561.2 1004 41.0
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.3e-157 559.7 1010 39.9
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.4e-155 553.9 1003 40.0
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 5.1e-150 536.2 1010 39.6
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 4.3e-149 533.1 994 38.7
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 5.6e-149 532.7 1000 39.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 7.3e-149 532.3 886 41.8
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.0e-146 524.2 1016 38.6
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.3e-145 521.5 974 38.4
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 4.9e-145 519.6 997 38.8
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 1.2e-143 515.0 1009 39.4
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.6e-143 513.1 1031 37.1
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 3.0e-142 510.4 1008 38.0
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 8.7e-142 508.8 935 37.2
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.5e-141 508.1 993 38.4
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 4.3e-141 506.5 999 38.7
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.6e-140 504.6 1015 38.8
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 1.8e-139 501.1 974 38.5
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 6.9e-139 499.2 874 41.4
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.4e-136 490.7 1020 37.3
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 3.2e-136 490.3 1057 35.5
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.2e-135 488.4 1053 36.8
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.2e-135 488.4 995 37.3
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.3e-134 485.0 990 36.8
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 1.8e-134 484.6 1013 35.9
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.2e-132 476.1 893 38.2
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 4.5e-130 469.9 993 36.6
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.0e-129 468.8 1008 37.0
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.0e-129 468.8 789 40.6
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 4.9e-129 466.5 996 36.0
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.2e-128 463.4 825 38.9
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 7.1e-128 462.6 1021 35.7
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.6e-124 451.4 971 37.0
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 8.2e-124 449.1 995 35.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.1e-123 448.7 1021 35.9
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.4e-123 447.6 1004 35.8
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.6e-122 444.1 986 35.4
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.7e-121 441.4 746 40.3
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 3.8e-121 440.3 1014 35.3
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 5.0e-121 439.9 989 36.8
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.8e-118 431.4 996 34.6
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.5e-117 427.6 1007 35.7
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 7.4e-117 426.0 999 34.5
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.4e-117 426.0 995 34.9
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.4e-117 426.0 995 34.9
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 9.7e-117 425.6 993 35.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 3.7e-116 423.7 586 45.6
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 3.7e-116 423.7 1017 34.4
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 2.4e-115 421.0 992 35.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 5.3e-115 419.9 985 35.2
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.2e-113 414.5 1015 34.5
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 1.1e-112 412.1 997 33.5
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 3.8e-105 387.1 865 36.0
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 7.4e-101 372.9 466 49.1
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 8.2e-100 369.4 682 41.6
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.0e-94 352.4 986 31.0
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.8e-91 341.7 473 44.8
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.8e-91 341.7 955 32.0
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 9.1e-91 339.3 986 31.7
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.2e-90 339.0 475 47.2
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 4.5e-90 337.0 861 33.1
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 2.7e-87 327.8 626 38.3
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.7e-87 327.0 894 31.9
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.9e-73 281.2 1005 28.1
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 6.1e-71 273.5 587 35.1
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.3e-70 271.6 392 44.6
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 8.6e-65 253.1 934 28.8
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 2.8e-63 248.1 330 46.4
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.8e-63 248.1 1083 27.1
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 9.2e-59 233.0 246 55.3
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.5e-56 225.7 279 50.2
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 2.5e-56 224.9 372 41.1
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 7.5e-53 213.4 953 26.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.5e-53 213.4 388 39.7
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.3e-41 175.3 248 46.8
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.6e-39 169.1 301 38.9
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-34 152.5 352 34.4
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 4.5e-29 134.4 186 51.6
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 1.3e-28 132.9 363 31.7
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.1e-24 119.8 826 23.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.8e-17 95.9 174 42.0
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 4.8e-15 87.8 84 61.9
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.4e-11 76.3 82 61.0
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 3.0e-09 68.6 128 41.4
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.0e-09 68.6 159 32.7
SMO367G0167 Selaginella moellendorffii HOM05D000641 ORTHO05D050849 3.7e-07 61.6 194 26.3
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 1.1e-06 60.1 320 24.1
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 3.1e-06 58.5 277 24.9


User provided reference genes

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