Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353501 Helianthus annuus HOM05D001728 ORTHO05D004174 1.8e-57 225.7 114 100.0
HanXRQChr05g0148261 Helianthus annuus HOM05D001728 ORTHO05D004174 7.1e-14 80.9 45 82.2
Oeu046575.1 Olea europaea HOM05D001728 ORTHO05D004174 2.1e-13 79.3 45 80.0
MSTRG.21773 Avicennia marina HOM05D001728 ORTHO05D004174 2.7e-13 79.0 51 72.5
Nitab4.5_0002150g0220 Nicotiana tabacum HOM05D001728 ORTHO05D004174 3.5e-13 78.6 45 77.8
Nitab4.5_0013613g0010 Nicotiana tabacum HOM05D001728 ORTHO05D004174 3.5e-13 78.6 45 77.8
SGA_v2.0_scaffold18G08401 Striga asiatica HOM05D001728 ORTHO05D004174 3.5e-13 78.6 45 80.0
CiPaw.02G075700 Carya illinoinensis HOM05D001728 ORTHO05D004174 6.0e-13 77.8 45 77.8
Ciclev10005518m.g Citrus clementina HOM05D001728 ORTHO05D004174 6.0e-13 77.8 45 77.8
Hma1.2p1_0013F.1_g008660 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 6.0e-13 77.8 45 77.8
Lsat_1_v5_gn_1_41000 Lactuca sativa HOM05D001728 ORTHO05D004174 6.0e-13 77.8 45 80.0
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 77.8
CiPaw.01G139100 Carya illinoinensis HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 77.8
Dinv44292 Davidia involucrata HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 77.8
ECA246G2493 Erigeron canadensis HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 80.0
Manes.15G005200 Manihot esculenta HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 77.8
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 7.9e-13 77.4 45 80.0
arahy.Tifrunner.gnm1.ann1.2RYD9Q Arachis hypogaea HOM05D001728 ORTHO05D004174 1.0e-12 77.0 45 75.6
arahy.Tifrunner.gnm1.ann1.C412JQ Arachis hypogaea HOM05D001728 ORTHO05D004174 1.0e-12 77.0 45 75.6
Ca_21446_v3 Cicer arietinum L. HOM05D001728 ORTHO05D004174 1.0e-12 77.0 45 77.8
Rhsim02G0004600 Rhododendron simsii HOM05D001728 ORTHO05D004174 1.0e-12 77.0 45 75.6
DCAR_030467 Daucus carota HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 77.8
DCAR_030475 Daucus carota HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 77.8
Glyma.09G036300 Glycine max HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 77.8
Lj6C689T11 Lonicera japonica HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 77.8
PSO210G3088 Papaver somniferum HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 73.3
PSO761G0142 Papaver somniferum HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 73.3
Phvul.006G117400 Phaseolus vulgaris HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 77.8
vmacro15187 Vaccinium macrocarpon HOM05D001728 ORTHO05D004174 1.3e-12 76.6 45 75.6
Actinidia13363 Actinidia chinensis HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 77.8
arahy.Tifrunner.gnm1.ann1.6P8AS9 Arachis hypogaea HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
arahy.Tifrunner.gnm1.ann1.MYV2K5 Arachis hypogaea HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
CSS0014848 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 1.8e-12 76.3 59 64.4
DCAR_027001 Daucus carota HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 77.8
FvH4_4g19560 Fragaria vesca HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
FAN07G1735 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
FAN12G2115 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
Glyma.15G141200 Glycine max HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
PGR031G3596 Punica granatum HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 77.8
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 1.8e-12 76.3 45 75.6
MSTRG.10147 Avicennia marina HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
Lj3A830T25 Lonicera japonica HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
Lj6g0011500 Lotus japonicus HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 73.3
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
Medtr4g121960 Medicago truncatula HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 75.6
Nn3g19516 Nelumbo nucifera HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 75.6
Potri.008G106300 Populus trichocarpa HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
VMungo0540G0586 Vigna mungo HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 77.8
GSVIVG01035008001 Vitis vinifera HOM05D001728 ORTHO05D004174 2.3e-12 75.9 45 75.6
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
CANSAT78G2180 Cannabis sativa HOM05D001728 ORTHO05D004174 3.0e-12 75.5 51 68.6
CDE08G1047 Ceratophyllum demersum HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
AUR62016122 Chenopodium quinoa HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
AUR62041394 Chenopodium quinoa HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
MELO3C006710.2 Cucumis melo HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
CsaV3_3G015120 Cucumis sativus L. HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
Dinv15187 Davidia involucrata HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
Lj4g0019830 Lotus japonicus HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
Peaxi162Scf00017g00816 Petunia axillaris HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 73.3
PGR004G2896 Punica granatum HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
Sed0009760 Sechium edule HOM05D001728 ORTHO05D004174 3.0e-12 75.5 45 75.6
TAR362G0220 Trochodendron aralioides HOM05D001728 ORTHO05D004174 3.0e-12 75.5 66 59.1
Aqoxy2G02747 Aquilegia oxysepala HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 75.6
CDE02G0105 Ceratophyllum demersum HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 73.3
Gohir.A10G171400 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 73.3
Gohir.D10G178500 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 73.3
Gorai.011G199600 Gossypium raimondii HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 73.3
Hma1.2p1_0078F.1_g039990 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 75.6
TPR.G27262 Trifolium pratense HOM05D001728 ORTHO05D004174 3.9e-12 75.1 45 73.3
MSTRG.24818 Avicennia marina HOM05D001728 ORTHO05D004174 5.1e-12 74.7 45 75.6
Atru.chr4.3016 Acer truncatum HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 71.1
Actinidia14261 Actinidia chinensis HOM05D001728 ORTHO05D004174 6.7e-12 74.3 44 77.3
Cpa.g.sc9.71 Carica papaya HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
Duzib151G0474 Durio zibethinus HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
Nn3g21703 Nelumbo nucifera HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
Hund03118 Selenicereus undatus HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
TPR.G16843 Trifolium pratense HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
TWI53G1778 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 6.7e-12 74.3 45 73.3
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 71.1
Gohir.D09G235700 Gossypium hirsutum HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
Gorai.006G258700 Gossypium raimondii HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
Lsat_1_v5_gn_6_116240 Lactuca sativa HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
MBI19_g07231_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
Psat4g024160 Pisum sativum HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
Thecc.04G299100 Theobroma cacao HOM05D001728 ORTHO05D004174 8.7e-12 73.9 45 73.3
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 1.1e-11 73.6 45 73.3
EL10Ac3g05476 Beta vulgaris HOM05D001728 ORTHO05D004174 1.1e-11 73.6 45 71.1
CAN.G484.58 Capsicum annuum HOM05D001728 ORTHO05D004174 1.1e-11 73.6 45 71.1
Cfa015326 Carpinus fangiana HOM05D001728 ORTHO05D004174 1.1e-11 73.6 45 73.3
Duzib212G0357 Durio zibethinus HOM05D001728 ORTHO05D004174 1.1e-11 73.6 46 71.7
Lalb_Chr18g0058741 Lupinus albus HOM05D001728 ORTHO05D004174 1.1e-11 73.6 45 75.6
PSO170G6117 Papaver somniferum HOM05D001728 ORTHO05D004174 1.5e-11 73.2 45 73.3
PSO357G0012 Papaver somniferum HOM05D001728 ORTHO05D004174 1.5e-11 73.2 45 73.3
QL06p011803 Quercus lobata HOM05D001728 ORTHO05D004174 1.5e-11 73.2 45 73.3
ATR0796G190 Amborella trichopoda HOM05D001728 ORTHO05D004174 1.9e-11 72.8 45 73.3
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 1.9e-11 72.8 45 68.9
SalBow2G0520 Salvia bowleyana HOM05D001728 ORTHO05D004174 1.9e-11 72.8 45 73.3
SalBow5G2437 Salvia bowleyana HOM05D001728 ORTHO05D004174 1.9e-11 72.8 45 73.3
BolC1t04696H Brassica oleracea HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 68.9
Dinv33122 Davidia involucrata HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 73.3
Oeu003758.1 Olea europaea HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 73.3
Oeu019973.1 Olea europaea HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 71.1
Phvul.003G113800 Phaseolus vulgaris HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 71.1
THA.LOC104818887 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 71.1
TWI73G0756 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 71.1
Zm00001eb014740 Zea mays HOM05D001728 ORTHO05D004174 2.5e-11 72.4 45 73.3
Carub.0003s1675 Capsella rubella HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 68.9
CARHR092250 Cardamine hirsuta HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 68.9
Cc03_g00930 Coffea canephora HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 73.3
Haze_01289 Corylus avellana HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 73.3
Glyma.17G032800 Glycine max HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 71.1
Nn1g04497 Nelumbo nucifera HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 71.1
Nn2g12682 Nelumbo nucifera HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 71.1
Oeu032018.1 Olea europaea HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 73.3
Sc19g0003160 Simmondsia chinensis HOM05D001728 ORTHO05D004174 3.3e-11 72.0 45 71.1
Thhalv10025677m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 4.3e-11 71.6 45 68.9
Sed0012381 Sechium edule HOM05D001728 ORTHO05D004174 4.3e-11 71.6 45 71.1
Solyc12g099310.2 Solanum lycopersicum HOM05D001728 ORTHO05D004174 4.3e-11 71.6 45 68.9
Sopen12g033990 Solanum pennellii HOM05D001728 ORTHO05D004174 4.3e-11 71.6 45 68.9
COL.COLO4_34632 Corchorus olitorius HOM05D001728 ORTHO05D004174 5.6e-11 71.2 50 66.0
Migut.G00049 Erythranthe guttata HOM05D001728 ORTHO05D004174 5.6e-11 71.2 45 73.3
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 5.6e-11 71.2 45 68.9
VMungo1215G0747 Vigna mungo HOM05D001728 ORTHO05D004174 5.6e-11 71.2 45 71.1
Duzib052G1178 Durio zibethinus HOM05D001728 ORTHO05D004174 7.4e-11 70.9 45 73.3
Peaxi162Scf00228g00218 Petunia axillaris HOM05D001728 ORTHO05D004174 7.4e-11 70.9 45 73.3
Zm00001eb396060 Zea mays HOM05D001728 ORTHO05D004174 7.4e-11 70.9 45 73.3
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 9.6e-11 70.5 45 68.9
PGSC0003DMG400004699 Solanum tuberosum HOM05D001728 ORTHO05D004174 9.6e-11 70.5 45 68.9
BcaC09g48652 Brassica carinata HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 66.7
A01p37320 Brassica napus HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 66.7
C01p47260 Brassica napus HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 66.7
BraA01t03790Z Brassica rapa HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 66.7
Gohir.A09G234900 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 71.1
Lalb_Chr15g0089241 Lupinus albus HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 71.1
TWI09G0044 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 1.3e-10 70.1 45 68.9
Aa31LG10G5870 Aethionema arabicum HOM05D001728 ORTHO05D004174 1.6e-10 69.7 45 71.1
Ah.13g071940 Amaranthus hybridus HOM05D001728 ORTHO05D004174 1.6e-10 69.7 45 64.4
Nn8g41281 Nelumbo nucifera HOM05D001728 ORTHO05D004174 1.6e-10 69.7 45 68.9
THA.LOC104820301 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 1.6e-10 69.7 45 71.1
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 2.1e-10 69.3 45 68.9
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 2.1e-10 69.3 45 68.9
MD16G1155400 Malus domestica HOM05D001728 ORTHO05D004174 2.1e-10 69.3 45 66.7
Nn1g01603 Nelumbo nucifera HOM05D001728 ORTHO05D004174 2.1e-10 69.3 45 71.1
CARHR274020 Cardamine hirsuta HOM05D001728 ORTHO05D004174 2.8e-10 68.9 45 66.7
Glyma.07G240600 Glycine max HOM05D001728 ORTHO05D004174 2.8e-10 68.9 45 68.9
Prupe.1G119000 Prunus persica HOM05D001728 ORTHO05D004174 2.8e-10 68.9 45 66.7
Eucgr.A00356 Eucalyptus grandis HOM05D001728 ORTHO05D004174 3.6e-10 68.6 45 68.9
MD13G1155700 Malus domestica HOM05D001728 ORTHO05D004174 3.6e-10 68.6 45 66.7
Mapoly0002s0227 Marchantia polymorpha HOM05D001728 ORTHO05D004174 3.6e-10 68.6 45 66.7
Hund11964 Selenicereus undatus HOM05D001728 ORTHO05D004174 3.6e-10 68.6 45 68.9
unitig_8.g3091 Utricularia gibba HOM05D001728 ORTHO05D004174 3.6e-10 68.6 45 71.1
arahy.Tifrunner.gnm1.ann1.JD5JQQ Arachis hypogaea HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 68.9
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 64.4
A01p21340 Brassica napus HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 64.4
C01p26690 Brassica napus HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 64.4
BolC1t02610H Brassica oleracea HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 64.4
BraA01t02040Z Brassica rapa HOM05D001728 ORTHO05D004174 4.8e-10 68.2 45 64.4
CARHR222630 Cardamine hirsuta HOM05D001728 ORTHO05D004174 6.2e-10 67.8 45 66.7
Aa31LG8G4040 Aethionema arabicum HOM05D001728 ORTHO05D004174 1.1e-09 67.0 45 66.7
unitig_22.g6343 Utricularia gibba HOM05D001728 ORTHO05D004174 1.4e-09 66.6 45 66.7
BcaC09g50319 Brassica carinata HOM05D001728 ORTHO05D004174 1.8e-09 66.2 45 64.4
HanXRQChr02g0048741 Helianthus annuus HOM05D001728 ORTHO05D004174 2.4e-09 65.9 43 76.7
SMO116G0349 Selaginella moellendorffii HOM05D001728 ORTHO05D004174 2.4e-09 65.9 59 52.5
HPP92_008952 Vanilla planifolia HOM05D001728 ORTHO05D004174 3.1e-09 65.5 45 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2363 Anthoceros agrestis HOM05D001728 ORTHO05D004174 4.0e-09 65.1 45 64.4
Os03g0308000 Oryza sativa ssp. japonica HOM05D001728 ORTHO05D004174 1.2e-08 63.5 45 66.7
CBR_g19546 Chara braunii HOM05D001728 ORTHO05D004174 2.6e-08 62.4 45 64.4
Pp3c7_24370 Physcomitrium patens HOM05D001728 ORTHO05D004174 3.4e-08 62.0 45 62.2
Prupe.6G047000 Prunus persica HOM05D001728 ORTHO05D004174 5.8e-08 61.2 45 60.0
Prupe.7G180600 Prunus persica HOM05D001728 ORTHO05D004174 5.8e-08 61.2 45 60.0
vmacro02402 Vaccinium macrocarpon HOM05D001728 ORTHO05D004174 5.8e-08 61.2 47 61.7
Nn2g11990 Nelumbo nucifera HOM05D001728 ORTHO05D004174 9.9e-08 60.5 45 64.4
Prupe.5G033600 Prunus persica HOM05D001728 ORTHO05D004174 8.4e-07 57.4 45 57.8
Prupe.7G180200 Prunus persica HOM05D001728 ORTHO05D004174 1.4e-06 56.6 45 57.8
Prupe.7G179700 Prunus persica HOM05D001728 ORTHO05D004174 2.4e-06 55.8 45 53.3


User provided reference genes

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