Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.5e-297 1025.4 516 100.0
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.1e-234 816.6 526 79.8
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 2.2e-227 792.3 524 78.8
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.6e-190 669.8 536 65.5
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.4e-186 656.0 555 63.8
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.2e-185 653.7 546 64.7
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 4.6e-185 651.7 542 62.5
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.7e-184 649.8 539 63.1
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 8.6e-184 647.5 545 63.5
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.8e-182 642.5 545 63.1
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.6e-182 642.1 545 62.8
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 4.7e-182 641.7 532 63.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.1e-181 639.0 557 62.3
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 6.8e-181 637.9 539 63.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.5e-180 636.7 550 61.3
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.4e-178 629.4 529 62.9
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 4.1e-178 628.6 553 61.7
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.1e-178 628.6 547 62.2
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.1e-178 628.6 547 62.3
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 9.2e-178 627.5 547 62.2
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 3.5e-177 625.5 558 60.9
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 3.5e-177 625.5 570 59.8
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 5.1e-176 621.7 543 61.0
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.5e-175 619.4 528 62.1
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 9.5e-175 617.5 515 62.1
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-174 617.1 546 59.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 8.1e-174 614.4 539 61.6
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 4.0e-173 612.1 532 60.7
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.2e-172 610.5 549 60.3
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 4.4e-172 608.6 547 61.1
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 5.8e-172 608.2 548 60.8
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-171 607.1 541 60.3
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.7e-171 606.7 544 61.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.1e-170 604.0 547 60.9
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 9.2e-170 600.9 529 59.5
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.2e-169 600.5 547 60.0
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.6e-169 600.1 531 60.5
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.7e-169 599.4 536 58.8
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 7.8e-169 597.8 521 60.8
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.0e-168 595.9 549 59.2
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.0e-168 595.9 552 60.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.9e-168 595.5 544 57.9
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 5.1e-168 595.1 537 59.8
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.5e-167 593.6 552 58.9
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.9e-167 593.2 537 58.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.5e-167 592.8 542 59.4
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.3e-167 592.4 553 58.4
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 3.6e-166 589.0 544 57.5
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.0e-165 585.5 528 59.3
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 4.0e-165 585.5 525 58.9
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 6.9e-165 584.7 553 57.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 9.0e-165 584.3 525 58.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-164 583.9 535 57.6
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.5e-164 583.6 543 58.7
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.5e-164 583.6 558 58.2
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.6e-164 582.8 538 58.0
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.4e-164 582.4 555 57.8
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 2.9e-163 579.3 543 57.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.8e-163 578.9 550 57.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 8.4e-163 577.8 542 58.1
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 4.2e-162 575.5 525 56.4
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 4.2e-162 575.5 544 58.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 5.4e-162 575.1 526 56.3
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.4e-162 575.1 544 56.8
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 7.1e-162 574.7 554 56.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.3e-162 574.3 542 57.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 9.3e-162 574.3 542 58.3
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.6e-161 573.5 542 57.7
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 6.0e-161 571.6 550 57.5
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.7e-160 570.1 539 55.5
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.9e-160 568.9 586 54.3
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.5e-159 567.0 566 57.4
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.9e-159 566.6 556 54.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 2.5e-159 566.2 526 58.4
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.1e-158 563.1 554 55.8
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.8e-158 562.8 491 62.3
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.2e-156 557.4 541 56.7
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.2e-156 557.4 521 58.3
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.2e-156 557.4 553 56.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 9.9e-156 554.3 563 55.2
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-155 553.1 555 55.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 3.8e-155 552.4 541 54.2
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.9e-155 552.0 533 57.8
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.4e-154 549.7 558 54.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.4e-154 549.7 567 52.9
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 7.1e-154 548.1 550 55.1
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 7.1e-154 548.1 476 62.8
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 9.3e-154 547.7 582 51.0
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 2.7e-153 546.2 540 53.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 4.6e-153 545.4 516 57.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.0e-152 544.3 549 54.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.5e-151 539.7 526 54.8
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.2e-148 530.8 487 57.1
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-148 530.8 512 54.9
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 4.5e-148 528.9 562 51.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.9e-147 525.4 520 56.0
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.2e-146 522.7 461 59.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 9.3e-146 521.2 512 55.3
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 6.0e-145 518.5 509 53.2
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 3.9e-144 515.8 484 58.9
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.3e-143 512.3 467 55.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 8.2e-142 508.1 505 53.7
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.4e-141 506.5 622 48.9
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.9e-141 505.0 522 55.0
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.4e-140 502.7 509 53.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.0e-139 501.1 447 57.7
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.9e-139 499.6 445 59.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-138 497.7 445 58.9
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.4e-138 497.3 538 52.6
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 7.9e-137 491.5 537 50.8
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.8e-136 490.3 547 51.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 9.0e-133 478.0 455 54.3
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.5e-132 477.2 549 48.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.8e-125 453.8 451 57.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.6e-121 440.7 481 52.6
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.4e-120 437.6 547 46.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.8e-120 437.2 436 53.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.6e-119 433.3 539 42.5
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.7e-118 429.5 537 46.0
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-114 417.5 584 43.0
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-114 417.5 584 43.0
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.4e-114 417.5 452 52.9
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.1e-113 413.7 584 42.6
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.5e-108 396.4 537 41.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.7e-108 395.2 549 41.9
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.1e-101 374.8 500 43.2
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 6.8e-96 355.5 300 63.0
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.1e-93 346.3 537 38.7
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.5e-90 337.8 415 46.7
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.6e-87 327.0 351 51.0
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.3e-86 324.7 295 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.7e-73 279.6 452 39.4
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 4.0e-72 276.6 703 31.6
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.0e-71 274.2 164 76.2
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.0e-69 265.8 615 33.2
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.1e-68 264.2 388 44.3
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-68 263.8 611 33.4
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 6.0e-68 262.7 168 70.2
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 6.6e-51 206.1 186 61.3
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.6e-49 200.3 153 67.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-48 197.6 188 49.5
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-41 175.3 253 44.7
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.0e-39 167.9 154 61.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.0e-39 167.9 171 55.6
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.4e-37 161.0 276 40.2
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.0e-36 156.4 151 58.3
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.3e-35 155.2 121 61.2
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 3.7e-33 147.1 139 56.8
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.2e-29 133.7 180 47.8
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.0e-27 127.5 94 62.8
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 3.4e-23 114.0 166 37.3
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 9.3e-21 105.9 191 33.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.3e-16 90.1 165 39.4
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 9.0e-16 89.4 102 45.1
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.0e-15 88.2 68 57.4
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 4.8e-09 67.0 39 74.4


User provided reference genes

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