Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 9.6e-220 766.5 389 100.0
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 5.5e-167 591.3 392 77.0
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 3.0e-165 585.5 387 77.8
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.2e-115 419.9 392 56.6
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.9e-115 419.5 392 56.6
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 3.5e-113 412.5 387 58.4
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 7.8e-113 411.4 386 58.5
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 1.3e-112 410.6 396 57.6
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 2.5e-111 406.4 392 58.2
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 3.3e-111 406.0 399 57.1
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 5.6e-111 405.2 404 55.9
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 7.3e-111 404.8 386 56.7
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 3.6e-110 402.5 373 58.7
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 6.2e-110 401.7 392 57.9
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 4.0e-109 399.1 383 57.4
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 6.9e-109 398.3 396 55.6
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 7.6e-108 394.8 376 57.7
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 3.8e-107 392.5 296 66.6
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 3.2e-106 389.4 338 59.8
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 4.2e-106 389.0 386 56.2
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 7.1e-106 388.3 395 54.2
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 1.6e-105 387.1 381 54.6
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 2.7e-105 386.3 380 56.8
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 4.6e-105 385.6 395 54.4
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.7e-104 383.6 383 56.7
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 3.9e-104 382.5 398 53.3
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 3.9e-104 382.5 338 58.0
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 5.1e-104 382.1 346 56.9
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 5.1e-104 382.1 349 57.0
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 8.7e-104 381.3 396 52.3
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 1.1e-103 380.9 357 56.0
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.9e-103 380.2 392 54.6
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.9e-103 380.2 378 57.1
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 5.6e-103 378.6 417 52.3
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.1e-102 376.7 409 50.6
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 2.1e-102 376.7 386 54.1
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 6.2e-102 375.2 416 51.0
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.1e-101 374.4 346 56.6
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 1.8e-101 373.6 389 53.5
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 6.9e-101 371.7 382 54.7
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 6.9e-101 371.7 381 53.8
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 6.9e-101 371.7 395 53.2
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 1.2e-100 370.9 295 62.7
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 2.6e-100 369.8 382 53.7
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 1.7e-99 367.1 393 53.7
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 2.9e-99 366.3 343 56.6
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 8.4e-99 364.8 330 56.7
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 1.6e-97 360.5 294 61.6
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 6.0e-97 358.6 317 57.7
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 6.0e-97 358.6 317 57.7
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 7.9e-97 358.2 313 60.4
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 5.1e-96 355.5 337 54.9
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 1.1e-95 354.4 328 57.0
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 1.9e-95 353.6 277 62.8
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 1.9e-95 353.6 340 55.3
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 4.3e-95 352.4 389 53.5
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 2.1e-94 350.1 382 52.4
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 6.2e-94 348.6 337 54.0
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.1e-93 347.8 383 52.7
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.4e-93 347.4 342 53.5
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 9.0e-93 344.7 314 58.9
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 9.0e-93 344.7 351 55.0
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 9.0e-93 344.7 423 48.9
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 4.5e-92 342.4 335 55.2
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.0e-91 341.3 380 48.9
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 2.9e-91 339.7 387 49.9
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 3.8e-91 339.3 387 50.9
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 6.5e-91 338.6 389 51.2
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 6.5e-91 338.6 399 51.6
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 8.4e-91 338.2 388 50.8
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 1.1e-90 337.8 353 54.7
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 1.4e-90 337.4 385 52.2
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 5.5e-90 335.5 392 50.0
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 5.5e-90 335.5 324 54.6
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.3e-88 330.9 397 50.1
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 3.0e-88 329.7 338 54.4
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 3.0e-88 329.7 389 49.4
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 3.9e-88 329.3 372 52.4
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.9e-88 329.3 381 49.9
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 6.7e-88 328.6 389 50.4
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 1.1e-87 327.8 346 52.6
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 3.3e-87 326.2 381 49.1
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 7.4e-87 325.1 387 48.8
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.3e-86 324.3 387 48.1
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 3.7e-86 322.8 336 52.7
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 2.4e-85 320.1 402 48.8
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 4.1e-85 319.3 404 48.5
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 4.1e-85 319.3 299 55.2
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 6.9e-85 318.5 384 47.7
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 1.5e-84 317.4 357 52.4
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.0e-83 314.7 241 63.9
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 6.5e-83 312.0 235 65.1
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 8.4e-83 311.6 329 48.9
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.4e-82 310.8 353 49.6
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 1.4e-82 310.8 377 51.5
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-76 290.4 222 64.9
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 7.7e-76 288.5 230 63.0
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 3.0e-72 276.6 364 43.4
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 5.7e-71 272.3 403 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 6.7e-64 248.8 351 41.0
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 6.3e-62 242.3 192 63.0
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 1.4e-53 214.5 171 62.6
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 3.2e-50 203.4 241 50.6
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 5.5e-50 202.6 248 47.2
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 5.7e-47 192.6 191 53.4
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 1.1e-45 188.3 328 37.8
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 1.6e-44 184.5 180 51.1
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 1.0e-43 181.8 315 38.4
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 6.1e-41 172.6 257 41.6
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.0e-40 171.8 239 39.7
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 2.0e-39 167.5 228 45.2
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 3.4e-39 166.8 183 51.9
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 3.7e-38 163.3 264 38.3
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.7e-38 163.3 292 36.6
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 8.3e-38 162.2 148 54.1
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.4e-37 160.6 256 39.1
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.9e-35 153.7 246 37.0
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 6.6e-35 152.5 148 52.7
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-34 151.8 144 53.5
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-33 147.1 137 54.7
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-33 147.1 292 33.9
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 1.5e-31 141.4 228 37.7
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.6e-25 120.2 163 42.3
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.0e-19 102.1 207 31.9
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 6.6e-19 99.4 125 45.6
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 6.4e-06 56.2 132 37.9


User provided reference genes

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