Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0296871 Helianthus annuus HOM05D002928 ORTHO05D013044 1.4e-27 125.6 64 100.0
HanXRQChr11g0351901 Helianthus annuus HOM05D002928 ORTHO05D013044 1.4e-27 125.6 64 100.0
HanXRQChr05g0143981 Helianthus annuus HOM05D002928 ORTHO05D003794 8.6e-25 116.3 61 95.1
HanXRQChr06g0180611 Helianthus annuus HOM05D002928 ORTHO05D003794 9.5e-24 112.8 61 91.8
Lj1C1016G8 Lonicera japonica HOM05D002928 ORTHO05D003794 9.5e-24 112.8 61 91.8
Lj1C1019G10 Lonicera japonica HOM05D002928 ORTHO05D003794 1.2e-23 112.5 61 90.2
MSTRG.19654 Avicennia marina HOM05D002928 ORTHO05D003794 2.1e-23 111.7 61 88.5
Lalb_Chr11g0072651 Lupinus albus HOM05D002928 ORTHO05D003794 2.1e-23 111.7 61 88.5
CAN.G160.55 Capsicum annuum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
CAN.G551.45 Capsicum annuum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
CiPaw.15G167900 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
ECA248G1996 Erigeron canadensis HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FvH4_1g00830 Fragaria vesca HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FvH4_2g11040 Fragaria vesca HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FAN23G2032 Fragaria x ananassa HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FAN24G1218 Fragaria x ananassa HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FAN26G1266 Fragaria x ananassa HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
FAN28G2936 Fragaria x ananassa HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Lsat_1_v5_gn_8_63581 Lactuca sativa HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Nitab4.5_0001571g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Nitab4.5_0005653g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Nitab4.5_0008875g0030 Nicotiana tabacum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Oeu054272.1 Olea europaea HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
RcHm_v2.0_Chr2g0085561 Rosa chinensis HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Solyc12g009990.2 Solanum lycopersicum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Sopen12g004860 Solanum pennellii HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
PGSC0003DMG400007905 Solanum tuberosum HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
SGA_v2.0_scaffold45G17027 Striga asiatica HOM05D002928 ORTHO05D003794 2.8e-23 111.3 61 88.5
Migut.J01351 Erythranthe guttata HOM05D002928 ORTHO05D003794 3.6e-23 110.9 61 88.5
Peaxi162Scf00062g00219 Petunia axillaris HOM05D002928 ORTHO05D003794 3.6e-23 110.9 61 88.5
Rhsim01G0028300 Rhododendron simsii HOM05D002928 ORTHO05D003794 3.6e-23 110.9 61 86.9
vmacro05439 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 3.6e-23 110.9 61 86.9
vmacro16797 Vaccinium macrocarpon HOM05D002928 ORTHO05D003794 3.6e-23 110.9 61 86.9
MD02G1006600 Malus domestica HOM05D002928 ORTHO05D003794 4.7e-23 110.5 61 88.5
MD15G1151700 Malus domestica HOM05D002928 ORTHO05D003794 4.7e-23 110.5 61 88.5
Cc06_g14860 Coffea canephora HOM05D002928 ORTHO05D003794 6.1e-23 110.2 61 86.9
Oeu052208.1 Olea europaea HOM05D002928 ORTHO05D003794 6.1e-23 110.2 61 86.9
SalBow1G3419 Salvia bowleyana HOM05D002928 ORTHO05D003794 6.1e-23 110.2 61 86.9
Manes.14G144400 Manihot esculenta HOM05D002928 ORTHO05D003794 1.0e-22 109.4 61 88.5
Sed0012591 Sechium edule HOM05D002928 ORTHO05D003794 1.0e-22 109.4 61 88.5
Eucgr.C02497 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.4e-22 109.0 61 86.9
Eucgr.C02536 Eucalyptus grandis HOM05D002928 ORTHO05D003794 1.4e-22 109.0 61 86.9
THA.LOC104819994 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 1.4e-22 109.0 61 86.9
ATR0115G002 Amborella trichopoda HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 88.5
arahy.Tifrunner.gnm1.ann1.AAXI8T Arachis hypogaea HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
arahy.Tifrunner.gnm1.ann1.V0HTQD Arachis hypogaea HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
Gohir.A07G027100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
Gohir.D07G031100 Gossypium hirsutum HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
Gorai.001G032400 Gossypium raimondii HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
Lalb_Chr13g0300841 Lupinus albus HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
Prupe.7G264100 Prunus persica HOM05D002928 ORTHO05D003794 1.8e-22 108.6 61 86.9
EL10Ac6g15341 Beta vulgaris HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
CSS0013967 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
CSS0027124 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Ca_21132_v3 Cicer arietinum L. HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
COL.COLO4_18815 Corchorus olitorius HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
COL.COLO4_22866 Corchorus olitorius HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Duzib168G1829 Durio zibethinus HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Gohir.A06G098000 Gossypium hirsutum HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Gohir.D06G098500 Gossypium hirsutum HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Gorai.010G113600 Gossypium raimondii HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Hma1.2p1_0222F.1_g093640 Hydrangea macrophylla HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Medtr4g130770 Medicago truncatula HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Potri.006G183600 Populus trichocarpa HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Sabra06G0139500 Salix brachista HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Sabra18G0090300 Salix brachista HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Sed0017586 Sechium edule HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Hund04383 Selenicereus undatus HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
TPR.G30712 Trifolium pratense HOM05D002928 ORTHO05D003794 2.3e-22 108.2 61 86.9
Ah.03g147670 Amaranthus hybridus HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
AL7G21540 Arabidopsis lyrata HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
AT4G30600 Arabidopsis thaliana HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
CSS0004317 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
CSS0014470 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
Carub.0007s0997 Capsella rubella HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
ClCG02G014440 Citrullus lanatus HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
MELO3C004130.2 Cucumis melo HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
CsaV3_2G007560 Cucumis sativus L. HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
Lj4g0021489 Lotus japonicus HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 86.9
Manes.06G034500 Manihot esculenta HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
Phvul.003G155500 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
Potri.018G105900 Populus trichocarpa HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
Thecc.09G029000 Theobroma cacao HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
TWI32G1175 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
TWI34G1864 Tripterygium wilfordii HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
VMungo1215G3047 Vigna mungo HOM05D002928 ORTHO05D003794 3.0e-22 107.8 61 85.2
Actinidia24380 Actinidia chinensis HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 85.2
CARHR238470 Cardamine hirsuta HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 86.9
Ciclev10007753m.g Citrus clementina HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 85.2
Dinv41370 Davidia involucrata HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 86.9
Rhsim03G0257400 Rhododendron simsii HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 85.2
GSVIVG01023620001 Vitis vinifera HOM05D002928 ORTHO05D003794 4.0e-22 107.5 61 86.9
Actinidia38670 Actinidia chinensis HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
BcaNung00569 Brassica carinata HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 88.5
C07p58050 Brassica napus HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 88.5
BolC7t46263H Brassica oleracea HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 88.5
Glyma.06G220500 Glycine max HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
Lj6g0013054 Lotus japonicus HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
Phvul.009G194700 Phaseolus vulgaris HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
Psat0s2403g0040 Pisum sativum HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
SGA_v2.0_scaffold23G10013 Striga asiatica HOM05D002928 ORTHO05D003794 5.2e-22 107.1 60 88.3
THA.LOC104803542 Tarenaya hassleriana HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
VMungo1309G0506 Vigna mungo HOM05D002928 ORTHO05D003794 5.2e-22 107.1 61 85.2
Haze_19196 Corylus avellana HOM05D002928 ORTHO05D003794 6.8e-22 106.7 61 86.9
Aa31LG2G19920 Aethionema arabicum HOM05D002928 ORTHO05D003794 8.9e-22 106.3 61 86.9
Glyma.17G073300 Glycine max HOM05D002928 ORTHO05D003794 8.9e-22 106.3 61 83.6
QL02p093370 Quercus lobata HOM05D002928 ORTHO05D003794 8.9e-22 106.3 61 86.9
TAR383G0178 Trochodendron aralioides HOM05D002928 ORTHO05D003794 8.9e-22 106.3 61 86.9
TAR625G0332 Trochodendron aralioides HOM05D002928 ORTHO05D003794 8.9e-22 106.3 61 86.9
BcaNung04564 Brassica carinata HOM05D002928 ORTHO05D003794 1.2e-21 105.9 61 86.9
A03p60120 Brassica napus HOM05D002928 ORTHO05D003794 1.2e-21 105.9 61 86.9
BraA03t15057Z Brassica rapa HOM05D002928 ORTHO05D003794 1.2e-21 105.9 61 86.9
SGA_v2.0_scaffold426G51505 Striga asiatica HOM05D002928 ORTHO05D003794 1.2e-21 105.9 60 88.3
ATR0772G178 Amborella trichopoda HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
AagrBONN_evm.TU.Sc2ySwM_344.2608 Anthoceros agrestis HOM05D002928 ORTHO05D003794 1.5e-21 105.5 62 80.6
BcaC09g51851 Brassica carinata HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
BcaNung02974 Brassica carinata HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
A01p07640 Brassica napus HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
C01p08330 Brassica napus HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
BolC1t00819H Brassica oleracea HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
BraA01t00707Z Brassica rapa HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 86.9
AUR62003540 Chenopodium quinoa HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 85.2
Duzib187G0297 Durio zibethinus HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 83.6
SGA_v2.0_scaffold265G46103 Striga asiatica HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 83.6
HPP92_005048 Vanilla planifolia HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 85.2
HPP92_005065 Vanilla planifolia HOM05D002928 ORTHO05D003794 1.5e-21 105.5 61 85.2
Aqoxy1G00970 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 2.6e-21 104.8 61 83.6
CSS0018916 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D013044 2.6e-21 104.8 61 85.2
CANSAT11G1221 Cannabis sativa HOM05D002928 ORTHO05D003794 2.6e-21 104.8 61 85.2
Cpa.g.sc46.162 Carica papaya HOM05D002928 ORTHO05D003794 2.6e-21 104.8 61 83.6
MBI16_g24666_MAGBIO Magnolia biondii HOM05D002928 ORTHO05D003794 2.6e-21 104.8 61 85.2
PGR102G2877 Punica granatum HOM05D002928 ORTHO05D003794 2.6e-21 104.8 61 83.6
Cfa020818 Carpinus fangiana HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 85.2
Dinv42848 Davidia involucrata HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 85.2
Dinv43252 Davidia involucrata HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 85.2
Nn8g39922 Nelumbo nucifera HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 83.6
Sp7g28470 Schrenkiella parvula HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 85.2
SEGI_12988 Sequoiadendron giganteum HOM05D002928 ORTHO05D003794 3.4e-21 104.4 61 83.6
Nn2g12407 Nelumbo nucifera HOM05D002928 ORTHO05D003794 4.4e-21 104.0 61 85.2
QL02p068861 Quercus lobata HOM05D002928 ORTHO05D003794 4.4e-21 104.0 61 83.6
Aqoxy3G02300 Aquilegia oxysepala HOM05D002928 ORTHO05D003794 5.7e-21 103.6 61 82.0
Thhalv10024667m.g Eutrema salsugineum HOM05D002928 ORTHO05D003794 5.7e-21 103.6 61 85.2
Lj1C1017T2 Lonicera japonica HOM05D002928 ORTHO05D003794 5.7e-21 103.6 61 88.5
CSS0007456 Camellia sinensis var. sinensis HOM05D002928 ORTHO05D013044 7.5e-21 103.2 61 83.6
CBR_g18888 Chara braunii HOM05D002928 ORTHO05D003794 9.8e-21 102.8 62 79.0
Os08g0480100 Oryza sativa ssp. japonica HOM05D002928 ORTHO05D003794 9.8e-21 102.8 61 83.6
Zm00001eb000480 Zea mays HOM05D002928 ORTHO05D003794 9.8e-21 102.8 61 83.6
Zm00001eb146090 Zea mays HOM05D002928 ORTHO05D013044 9.8e-21 102.8 61 83.6
CDE03G0364 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 1.3e-20 102.4 61 82.0
CDE06G1463 Ceratophyllum demersum HOM05D002928 ORTHO05D003794 1.3e-20 102.4 61 82.0
AUR62017854 Chenopodium quinoa HOM05D002928 ORTHO05D003794 1.7e-20 102.1 61 82.0
unitig_0.g516 Utricularia gibba HOM05D002928 ORTHO05D003794 1.7e-20 102.1 60 83.3
Mapoly0062s0007 Marchantia polymorpha HOM05D002928 ORTHO05D003794 2.2e-20 101.7 61 78.7
PSO063G7436 Papaver somniferum HOM05D002928 ORTHO05D003794 3.7e-20 100.9 61 82.0
PSO384G2120 Papaver somniferum HOM05D002928 ORTHO05D003794 3.7e-20 100.9 61 82.0
Actinidia23555 Actinidia chinensis HOM05D002928 ORTHO05D002632 4.9e-20 100.5 61 80.3
PSO339G1052 Papaver somniferum HOM05D002928 ORTHO05D003794 6.4e-20 100.1 61 80.3
unitig_60.g25522 Utricularia gibba HOM05D002928 ORTHO05D003794 6.4e-20 100.1 60 81.7
PSO591G0067 Papaver somniferum HOM05D002928 ORTHO05D003794 8.3e-20 99.8 61 80.3
CiPaw.16G108700 Carya illinoinensis HOM05D002928 ORTHO05D003794 5.4e-19 97.1 60 81.7
Pp3c19_22330 Physcomitrium patens HOM05D002928 ORTHO05D003794 5.4e-19 97.1 61 75.4
Psat5g098400 Pisum sativum HOM05D002928 ORTHO05D013044 5.4e-19 97.1 61 78.7
Psat5g133560 Pisum sativum HOM05D002928 ORTHO05D013044 7.0e-19 96.7 56 85.7
SMO367G0463 Selaginella moellendorffii HOM05D002928 ORTHO05D003794 2.0e-18 95.1 61 73.8
Pp3c22_18840 Physcomitrium patens HOM05D002928 ORTHO05D003794 5.9e-18 93.6 62 72.6
Psat5g135320 Pisum sativum HOM05D002928 ORTHO05D013044 7.8e-18 93.2 56 83.9
MCO13G152 Micromonas commoda HOM05D002928 ORTHO05D003794 1.0e-17 92.8 54 79.6
Cre16.g683950 Chlamydomonas reinhardtii HOM05D002928 ORTHO05D003794 1.7e-17 92.0 54 79.6
PRCOL_00003397 Prasinoderma coloniale HOM05D002928 ORTHO05D003794 8.6e-17 89.7 55 74.5
Rhsim01G0028400 Rhododendron simsii HOM05D002928 ORTHO05D011390 8.6e-17 89.7 51 80.4
CiPaw.16G110000 Carya illinoinensis HOM05D002928 ORTHO05D003794 2.5e-16 88.2 65 69.2
vmacro18649 Vaccinium macrocarpon HOM05D002928 ORTHO05D013044 2.8e-15 84.7 63 69.8
PSO210G4055 Papaver somniferum HOM05D002928 ORTHO05D003794 6.2e-15 83.6 61 67.2
PSO210G6788 Papaver somniferum HOM05D002928 ORTHO05D003794 6.2e-15 83.6 61 67.2
Psat5g098440 Pisum sativum HOM05D002928 ORTHO05D013044 2.3e-14 81.6 90 53.3
Haze_26908 Corylus avellana HOM05D002928 ORTHO05D003794 4.0e-14 80.9 53 66.0
RcHm_v2.0_Chr7g0224871 Rosa chinensis HOM05D002928 ORTHO05D003794 2.4e-11 71.6 47 78.7
TPR.G24848 Trifolium pratense HOM05D002928 ORTHO05D003794 7.0e-11 70.1 37 91.9
Nitab4.5_0002891g0050 Nicotiana tabacum HOM05D002928 ORTHO05D003794 7.3e-08 60.1 61 55.7
CiPaw.16G110200 Carya illinoinensis HOM05D002928 ORTHO05D003794 8.1e-07 56.6 49 63.3


User provided reference genes

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