Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.8e-40 168.7 78 100.0
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-27 125.9 60 96.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.5e-27 123.6 60 95.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-26 122.9 60 93.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-26 121.7 60 91.7
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-26 121.7 60 91.7
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.5e-26 121.7 60 93.3
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-26 121.7 60 93.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.2e-26 121.3 60 91.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 4.2e-26 120.9 59 91.5
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 4.2e-26 120.9 61 88.5
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.2e-26 120.9 60 91.7
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.5e-26 120.6 60 90.0
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.5e-26 120.6 60 91.7
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.5e-26 120.6 60 91.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.5e-26 120.6 60 91.7
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.5e-26 120.6 59 91.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 5.5e-26 120.6 59 91.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.5e-26 120.6 60 90.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 7.2e-26 120.2 59 89.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 9.4e-26 119.8 60 90.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.2e-25 119.4 60 88.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.2e-25 119.4 60 90.0
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.2e-25 119.4 60 90.0
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.2e-25 119.4 60 90.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-25 119.4 58 91.4
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 88.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 90.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 90.0
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.6e-25 119.0 58 91.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 90.0
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 90.0
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.6e-25 119.0 60 90.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.1e-25 118.6 61 86.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.1e-25 118.6 59 88.1
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.1e-25 118.6 60 88.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.1e-25 118.6 58 91.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 2.1e-25 118.6 60 88.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.1e-25 118.6 60 88.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.7e-25 118.2 60 88.3
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.7e-25 118.2 59 88.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.7e-25 118.2 59 88.1
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.7e-25 118.2 59 88.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.7e-25 118.2 59 88.1
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.6e-25 117.9 60 88.3
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 3.6e-25 117.9 59 88.1
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 3.6e-25 117.9 59 88.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.6e-25 117.9 60 91.7
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 3.6e-25 117.9 60 88.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 4.7e-25 117.5 58 89.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 4.7e-25 117.5 58 89.7
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.7e-25 117.5 60 88.3
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.7e-25 117.5 58 89.7
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 4.7e-25 117.5 60 88.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.1e-25 117.1 60 88.3
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.1e-25 117.1 59 86.4
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 8.0e-25 116.7 58 89.7
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 8.0e-25 116.7 58 89.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 8.0e-25 116.7 58 89.7
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 8.0e-25 116.7 60 86.7
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 8.0e-25 116.7 60 86.7
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 8.0e-25 116.7 60 86.7
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.0e-25 116.7 58 89.7
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 8.0e-25 116.7 58 89.7
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 8.0e-25 116.7 60 85.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 8.0e-25 116.7 61 90.2
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 8.0e-25 116.7 61 90.2
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-24 116.3 59 89.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.4e-24 115.9 58 87.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.8e-24 115.5 58 89.7
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.8e-24 115.5 60 86.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.0e-24 114.4 61 88.5
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 4.0e-24 114.4 58 87.9
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.0e-24 114.4 60 88.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.0e-24 114.4 61 88.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 5.2e-24 114.0 58 87.9
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.5e-23 112.5 59 86.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.0e-23 112.1 60 88.3
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.4e-23 111.3 60 83.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.4e-23 111.3 59 84.7
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.4e-23 110.9 59 83.1
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.4e-23 110.9 58 87.9
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.4e-23 110.9 58 87.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 5.7e-23 110.5 60 85.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 5.7e-23 110.5 60 83.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.3e-22 109.4 60 83.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.8e-22 108.2 55 87.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.7e-22 107.8 59 83.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.7e-22 107.8 57 86.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 4.9e-22 107.5 58 82.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.9e-22 107.5 60 80.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 8.3e-22 106.7 60 78.3
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 8.3e-22 106.7 60 78.3
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.1e-21 106.3 87 63.2
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.1e-21 104.8 58 81.0
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 4.1e-21 104.4 59 81.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.4e-21 104.0 62 80.6
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.0e-20 102.1 51 88.2
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-20 102.1 51 88.2
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.3e-19 98.6 48 91.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.5e-18 95.1 60 76.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 4.2e-18 94.4 60 70.0
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-17 90.9 60 71.7
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-17 90.9 60 71.7
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 4.7e-17 90.9 60 71.7
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 6.1e-17 90.5 53 81.1
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 6.1e-17 90.5 57 71.9
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.0e-16 87.8 42 90.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.2e-16 87.4 60 68.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 6.8e-16 87.0 49 85.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 4.4e-15 84.3 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.4e-13 79.3 55 61.8
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.0e-12 75.5 58 62.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 1.0e-11 73.2 58 62.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.3e-11 72.8 42 76.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.0e-11 70.9 59 52.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 6.6e-11 70.5 55 54.5
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.5e-10 69.3 55 54.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.3e-10 68.2 54 55.6
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-09 66.2 35 82.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.1e-09 65.5 35 85.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 6.2e-09 63.9 55 50.9
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.4e-08 62.8 57 52.6
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.5e-07 59.3 57 45.6


User provided reference genes

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