Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 7.1e-131 470.7 255 100.0
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 2.5e-115 419.1 231 96.1
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 2.5e-59 233.0 265 52.5
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 7.1e-54 214.9 252 54.4
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 1.9e-46 190.3 266 46.6
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 1.3e-31 141.0 252 40.9
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.2e-29 134.4 252 40.1
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 3.5e-29 132.9 279 39.4
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 4.6e-29 132.5 279 39.1
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 7.9e-29 131.7 293 35.8
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.3e-28 131.0 252 38.5
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 1.3e-28 131.0 284 41.2
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 2.3e-28 130.2 253 40.3
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 3.9e-28 129.4 252 38.9
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 8.7e-28 128.3 246 37.8
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 1.5e-27 127.5 253 37.9
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.5e-27 127.5 289 36.3
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 1.5e-27 127.5 265 39.6
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 1.9e-27 127.1 286 39.9
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 7.3e-27 125.2 260 36.5
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 2.1e-26 123.6 268 35.4
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 2.8e-26 123.2 267 34.8
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 6.2e-26 122.1 284 36.3
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 8.1e-26 121.7 263 35.4
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.1e-25 121.3 259 37.1
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 1.4e-25 120.9 281 36.7
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.8e-25 120.6 281 35.2
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.8e-25 120.6 263 35.4
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.8e-25 120.6 284 35.9
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.4e-25 120.2 265 35.1
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.4e-25 120.2 265 35.1
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 5.3e-25 119.0 290 38.3
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 5.3e-25 119.0 281 34.9
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 6.9e-25 118.6 230 39.6
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 9.0e-25 118.2 281 35.9
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 9.0e-25 118.2 237 38.4
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.2e-24 117.9 232 40.1
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 1.2e-24 117.9 235 38.7
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.0e-24 117.1 267 33.7
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 5.8e-24 115.5 220 40.0
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 7.6e-24 115.2 279 33.0
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 9.9e-24 114.8 285 35.1
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 9.9e-24 114.8 233 37.3
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 1.3e-23 114.4 292 34.9
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 1.3e-23 114.4 270 35.6
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 2.2e-23 113.6 253 37.9
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 2.9e-23 113.2 281 34.2
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 3.8e-23 112.8 289 36.3
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.4e-22 110.9 262 36.3
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 2.4e-22 110.2 253 36.0
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.2e-22 109.4 262 35.9
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 9.3e-22 108.2 165 43.6
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.2e-21 107.8 262 35.5
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 1.2e-21 107.8 240 35.8
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 1.2e-21 107.8 276 35.1
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 1.6e-21 107.5 277 32.9
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 2.7e-21 106.7 256 42.2
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 3.5e-21 106.3 279 36.2
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 6.0e-21 105.5 286 34.3
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 6.0e-21 105.5 244 36.5
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.8e-20 104.0 252 34.9
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 5.1e-20 102.4 277 32.9
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 8.7e-20 101.7 116 47.4
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.1e-19 101.3 179 40.2
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.1e-19 101.3 226 37.6
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 1.5e-19 100.9 250 33.2
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.5e-19 100.9 275 34.9
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.5e-19 100.9 301 32.2
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 1.9e-19 100.5 302 31.8
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 3.3e-19 99.8 247 35.2
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 3.3e-19 99.8 232 38.8
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 7.4e-19 98.6 230 37.4
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 7.4e-19 98.6 227 33.9
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 7.4e-19 98.6 177 41.2
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 7.4e-19 98.6 215 38.6
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 9.6e-19 98.2 268 33.2
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 9.6e-19 98.2 272 33.1
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 9.6e-19 98.2 259 34.7
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 1.3e-18 97.8 267 33.3
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 2.1e-18 97.1 271 33.6
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 3.7e-18 96.3 166 39.8
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 3.7e-18 96.3 175 42.9
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 6.2e-18 95.5 278 33.1
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 1.4e-17 94.4 281 31.3
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 1.4e-17 94.4 278 33.1
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 3.1e-17 93.2 278 32.7
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 4.0e-17 92.8 274 33.6
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 4.0e-17 92.8 233 41.2
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 4.0e-17 92.8 239 40.2
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 4.0e-17 92.8 278 32.0
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 4.0e-17 92.8 244 36.5
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 9.0e-17 91.7 281 31.3
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 1.5e-16 90.9 235 35.3
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 2.0e-16 90.5 164 36.6
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.0e-16 90.5 171 36.8
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 2.0e-16 90.5 273 31.1
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 2.0e-16 90.5 175 41.1
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 3.4e-16 89.7 273 31.1
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 3.4e-16 89.7 284 32.7
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 4.5e-16 89.4 279 32.6
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 5.8e-16 89.0 276 30.8
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 5.8e-16 89.0 276 30.8
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.0e-15 88.2 277 30.0
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 1.3e-15 87.8 274 31.4
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 1.3e-15 87.8 274 31.4
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 1.7e-15 87.4 263 32.7
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 2.2e-15 87.0 184 35.9
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.8e-15 86.3 178 35.4
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 4.9e-15 85.9 169 36.7
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 4.9e-15 85.9 235 33.2
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 6.5e-15 85.5 282 31.6
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 8.4e-15 85.1 246 34.1
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.1e-14 84.7 252 31.0
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 1.1e-14 84.7 214 33.6
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.4e-14 84.3 158 38.6
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 2.5e-14 83.6 245 31.8
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 5.5e-14 82.4 230 34.8
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 5.5e-14 82.4 225 32.9
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 5.5e-14 82.4 242 34.7
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 7.1e-14 82.0 202 32.7
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 7.1e-14 82.0 144 47.2
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 7.1e-14 82.0 256 38.7
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.2e-13 81.3 229 31.9
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.6e-13 80.9 241 32.4
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 1.6e-13 80.9 235 32.8
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 3.5e-13 79.7 260 32.3
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 3.5e-13 79.7 260 32.3
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 4.6e-13 79.3 229 33.6
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 6.0e-13 79.0 219 29.7
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 1.0e-12 78.2 306 29.7
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 2.3e-12 77.0 248 30.6
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.3e-12 77.0 225 31.1
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 3.0e-12 76.6 285 30.9
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 5.1e-12 75.9 228 31.1
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 5.1e-12 75.9 235 30.2
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 5.1e-12 75.9 235 30.2
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 6.7e-12 75.5 225 31.1
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 8.7e-12 75.1 275 33.8
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 8.7e-12 75.1 235 30.6
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 8.7e-12 75.1 253 32.4
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 1.9e-11 73.9 164 36.0
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 2.5e-11 73.6 195 32.8
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 2.5e-11 73.6 233 29.6
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.3e-11 72.8 240 30.0
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 5.7e-11 72.4 240 30.0
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 9.6e-11 71.6 243 32.5
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 9.6e-11 71.6 231 30.7
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 9.6e-11 71.6 248 31.9
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 9.6e-11 71.6 263 28.5
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.6e-10 70.9 273 29.3
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.6e-10 70.9 227 32.2
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.6e-10 70.9 168 33.9
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 2.1e-10 70.5 215 32.1
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 4.8e-10 69.3 148 37.2
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 4.8e-10 69.3 223 31.8
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 4.8e-10 69.3 223 31.8
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 4.8e-10 69.3 148 37.2
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 1.4e-09 67.8 254 31.1
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 1.4e-09 67.8 159 31.4
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 4.1e-09 66.2 224 29.0
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 4.1e-09 66.2 148 36.5
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 4.1e-09 66.2 256 33.2
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 5.3e-09 65.9 264 32.2
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 9.0e-09 65.1 113 42.5
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 5.0e-07 59.3 264 29.9


User provided reference genes

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