Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 3.0e-205 718.4 387 100.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.4e-117 427.2 429 63.9
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 4.9e-99 365.5 424 55.2
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.6e-94 350.5 447 54.8
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 1.5e-92 344.0 448 50.2
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 2.6e-92 343.2 448 50.9
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.6e-92 343.2 448 49.6
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.4e-90 336.7 415 53.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.4e-90 335.5 430 50.7
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 7.1e-90 335.1 324 61.4
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 2.7e-89 333.2 441 52.2
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 2.7e-89 333.2 439 52.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.5e-89 332.8 417 53.7
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.7e-88 330.5 436 52.8
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.9e-88 329.3 424 53.8
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 5.1e-88 328.9 405 52.6
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 8.7e-88 328.2 442 54.3
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.5e-87 327.4 339 57.8
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 2.5e-87 326.6 448 51.3
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 4.3e-87 325.9 420 55.7
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 3.6e-86 322.8 418 51.0
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 4.8e-86 322.4 449 49.2
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.1e-85 321.2 419 53.9
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.4e-85 320.9 411 51.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 2.4e-85 320.1 423 49.2
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.9e-85 318.5 424 49.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.0e-85 318.2 321 58.3
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.2e-84 317.8 461 46.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.0e-84 317.0 436 50.5
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.6e-84 316.6 448 50.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.5e-84 315.8 458 48.5
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 4.9e-83 312.4 425 51.3
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.9e-83 312.4 451 51.0
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 4.9e-83 312.4 320 57.5
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.4e-82 310.8 445 51.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 5.4e-82 308.9 438 52.5
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 2.1e-81 307.0 442 48.6
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.7e-81 306.6 460 48.5
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.5e-81 306.2 449 50.3
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 6.0e-81 305.4 455 48.4
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.9e-81 305.1 444 52.0
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.8e-80 303.9 444 50.0
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 5.1e-80 302.4 441 50.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.5e-79 300.1 439 48.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.6e-78 297.4 361 54.6
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 2.8e-78 296.6 406 53.0
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 8.1e-78 295.0 424 47.9
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.4e-77 294.3 420 49.5
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.4e-77 294.3 407 48.9
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.4e-77 293.5 460 45.7
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 5.3e-77 292.4 382 52.4
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.2e-76 291.2 363 54.0
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 4.5e-76 289.3 449 45.9
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 1.3e-75 287.7 463 47.3
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.7e-75 287.3 418 51.4
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.7e-75 287.3 482 44.6
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.9e-75 286.6 453 43.9
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.9e-75 286.6 379 49.6
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 4.9e-75 285.8 445 51.5
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.9e-75 285.8 421 49.6
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 8.4e-75 285.0 433 50.1
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 2.5e-74 283.5 427 48.7
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 9.3e-74 281.6 322 56.5
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 1.2e-73 281.2 414 50.2
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 4.6e-73 279.3 318 55.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 7.9e-73 278.5 414 47.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.3e-72 277.7 510 43.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.5e-71 274.2 425 48.7
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.7e-70 269.6 315 54.3
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 2.0e-68 263.8 284 58.8
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 2.6e-68 263.5 432 44.9
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.4e-68 263.1 305 54.8
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 5.8e-68 262.3 325 50.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.9e-67 260.0 417 44.8
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 4.9e-67 259.2 320 52.8
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.9e-67 259.2 415 45.5
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.1e-66 258.1 349 49.3
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 1.1e-66 258.1 424 42.5
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.1e-66 258.1 427 42.4
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.9e-66 257.3 418 46.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 5.5e-66 255.8 324 50.3
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-65 254.6 412 46.6
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 2.1e-65 253.8 414 45.2
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 3.3e-63 246.5 331 52.0
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 9.7e-63 245.0 386 46.9
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.3e-62 244.6 399 46.4
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.1e-61 240.0 304 49.3
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 6.9e-61 238.8 416 41.8
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 9.0e-61 238.4 322 49.4
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.2e-60 238.0 391 43.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.2e-60 238.0 611 32.9
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 2.0e-60 237.3 395 43.3
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.2e-59 233.8 459 38.6
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 3.2e-58 229.9 398 46.7
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.0e-56 223.4 393 44.3
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.9e-56 223.0 310 48.4
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.1e-55 221.5 394 45.4
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.1e-55 221.5 389 44.7
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-55 220.7 418 40.7
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.0e-55 220.7 396 45.5
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.0e-55 220.7 396 45.5
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.0e-55 220.7 403 44.9
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 2.5e-55 220.3 394 44.9
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.3e-54 218.0 317 48.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.7e-54 217.6 399 44.1
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.7e-54 217.6 211 60.7
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.7e-54 217.6 378 43.4
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 2.2e-54 217.2 381 45.7
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 4.8e-54 216.1 399 43.6
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 6.9e-53 212.2 412 43.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.0e-51 208.4 288 48.6
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 8.5e-51 205.3 286 50.3
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.2e-49 201.4 190 61.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.1e-49 199.1 315 43.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 6.1e-49 199.1 293 46.4
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.4e-48 198.0 342 42.4
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 7.0e-45 185.7 402 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 5.9e-44 182.6 384 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.7e-43 181.0 435 37.7
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 6.5e-43 179.1 372 41.7
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.4e-42 177.9 297 43.8
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.9e-42 177.6 272 43.4
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 6.1e-41 172.6 308 39.6
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 3.9e-40 169.9 188 54.8
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 1.5e-39 167.9 202 52.0
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.8e-38 163.7 187 52.4
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 6.3e-38 162.5 178 53.4
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 2.0e-36 157.5 108 69.4
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 7.7e-36 155.6 201 49.3
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 4.0e-32 143.3 195 45.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 4.0e-32 143.3 414 34.5
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.4e-29 134.0 70 87.1
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 7.0e-29 132.5 150 50.0
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.8e-27 126.7 72 80.6
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.5e-27 125.6 105 61.0
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.5e-27 125.6 92 63.0
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.1e-26 125.2 279 39.1
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.5e-26 124.8 72 79.2
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 9.4e-26 122.1 133 57.9
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.6e-25 120.2 172 46.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 1.4e-24 118.2 146 54.1
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.7e-22 110.2 70 71.4
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.8e-19 100.1 111 48.6
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 8.6e-19 99.0 134 50.7
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 1.2e-17 95.1 190 34.7
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.4e-16 91.7 255 36.5
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.2e-15 88.6 251 32.7
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-15 88.6 260 35.8
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.1e-13 80.1 230 35.7
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-12 77.8 231 34.6
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-12 77.4 231 34.6
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-12 77.4 231 34.6
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 3.3e-10 70.5 152 38.2
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 3.3e-10 70.5 100 37.0
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.3e-10 69.3 245 31.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 9.5e-10 68.9 194 30.4
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 5.2e-08 63.2 42 69.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.5e-07 59.3 80 46.2


User provided reference genes

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