Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 2.8e-47 191.4 87 100.0
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 4.3e-43 177.6 87 92.0
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.1e-42 175.3 87 92.0
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 6.1e-42 173.7 87 90.8
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.0e-41 172.9 87 89.7
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-40 169.1 86 87.2
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 1.5e-40 169.1 87 86.2
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 2.6e-40 168.3 87 86.2
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 2.6e-40 168.3 88 88.6
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 2.6e-40 168.3 88 88.6
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.4e-40 167.9 87 86.2
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 5.8e-40 167.2 88 87.5
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.7e-39 165.6 88 87.5
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.7e-39 165.6 87 87.4
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 2.2e-39 165.2 85 88.2
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 2.2e-39 165.2 85 88.2
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 2.9e-39 164.9 87 85.1
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 2.9e-39 164.9 82 87.8
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.9e-39 164.9 82 89.0
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 2.9e-39 164.9 87 83.9
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 3.7e-39 164.5 87 85.1
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.7e-39 164.5 87 87.4
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 6.4e-39 163.7 85 84.7
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 6.4e-39 163.7 88 86.4
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 6.4e-39 163.7 82 87.8
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 8.3e-39 163.3 88 85.2
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.4e-38 162.5 88 86.4
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.4e-38 162.5 87 83.9
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 3.2e-38 161.4 88 85.2
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.2e-38 161.4 88 85.2
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 4.1e-38 161.0 83 84.3
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 5.4e-38 160.6 88 85.2
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 7.0e-38 160.2 87 83.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 7.0e-38 160.2 85 87.1
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 7.0e-38 160.2 85 87.1
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.2e-38 159.8 88 84.1
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 9.2e-38 159.8 84 84.5
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 9.2e-38 159.8 84 84.5
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 9.2e-38 159.8 84 84.5
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 1.2e-37 159.5 83 83.1
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.6e-37 159.1 86 83.7
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.0e-37 158.7 88 81.8
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 4.6e-37 157.5 88 83.0
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.6e-37 157.5 88 84.1
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 4.6e-37 157.5 88 80.7
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 6.0e-37 157.1 87 82.8
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 7.8e-37 156.8 88 80.7
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 7.8e-37 156.8 82 84.1
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.0e-36 156.4 88 79.5
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.3e-36 156.0 82 84.1
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 2.3e-36 155.2 85 83.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.3e-36 155.2 84 84.5
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.3e-36 155.2 84 84.5
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 2.3e-36 155.2 88 81.8
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 3.0e-36 154.8 82 81.7
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.9e-36 154.5 87 81.6
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 3.9e-36 154.5 88 81.8
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 6.6e-36 153.7 88 81.8
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 8.6e-36 153.3 85 82.4
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 8.6e-36 153.3 87 80.5
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 1.9e-35 152.1 82 84.1
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.3e-35 151.4 87 80.5
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 4.3e-35 151.0 88 84.1
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 4.3e-35 151.0 111 67.6
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 4.7e-34 147.5 88 83.0
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 4.7e-34 147.5 88 83.0
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 4.7e-34 147.5 88 83.0
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 6.2e-34 147.1 87 82.8
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 6.2e-34 147.1 87 81.6
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 6.2e-34 147.1 87 82.8
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 6.2e-34 147.1 88 80.7
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.4e-33 146.0 88 81.8
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.4e-33 146.0 88 81.8
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.4e-33 146.0 87 81.6
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.4e-33 146.0 88 81.8
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.4e-33 146.0 87 81.6
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.4e-33 146.0 87 81.6
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.4e-33 146.0 88 81.8
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 5.2e-33 144.1 83 78.3
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 6.8e-33 143.7 85 80.0
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 6.8e-33 143.7 85 80.0
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 6.8e-33 143.7 85 80.0
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 6.8e-33 143.7 85 80.0
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 8.9e-33 143.3 85 75.3
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 2.0e-32 142.1 86 74.4
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.6e-32 141.7 83 81.9
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 2.6e-32 141.7 90 77.8
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 5.8e-32 140.6 79 79.7
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 5.8e-32 140.6 79 77.2
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.2e-31 138.7 86 76.7
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.2e-31 138.7 86 76.7
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.1e-30 136.3 83 74.7
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 5.4e-30 134.0 79 78.5
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 2.1e-29 132.1 79 73.4
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 2.7e-29 131.7 87 71.3
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 4.6e-29 131.0 64 85.9
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 4.6e-29 131.0 75 74.7
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.0e-29 130.6 86 73.3
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 5.1e-28 127.5 64 85.9
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.6e-28 126.7 67 80.6
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.9e-27 125.6 64 84.4
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.6e-26 122.5 63 82.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 4.9e-23 110.9 64 79.7
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 3.9e-20 101.3 57 75.4
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 1.9e-19 99.0 50 86.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 9.5e-19 96.7 64 62.5
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 1.7e-15 85.9 61 63.9
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.4e-14 82.8 58 62.1
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 9.6e-11 70.1 39 79.5
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.8e-10 67.8 38 84.2
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.4e-09 65.5 39 71.8
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 4.4e-08 61.2 42 78.6
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 3.2e-06 55.1 41 68.3


User provided reference genes

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