Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-241 839.7 422 100.0
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.9e-170 602.4 423 75.2
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 4.4e-155 552.0 422 70.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.6e-142 508.4 436 59.4
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.4e-139 498.8 425 58.6
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.3e-135 487.3 429 58.0
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.3e-134 482.3 431 59.6
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 2.4e-132 476.5 433 55.7
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.3e-132 475.3 439 56.3
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.9e-132 474.9 444 56.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.8e-130 469.2 439 54.9
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 6.4e-130 468.4 441 54.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 8.4e-130 468.0 431 55.2
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.1e-129 467.6 424 56.6
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 4.6e-128 462.2 443 54.9
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 7.9e-128 461.5 440 55.9
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.0e-127 461.1 437 54.5
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 6.6e-127 458.4 436 53.4
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 6.6e-127 458.4 433 55.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.7e-127 458.0 445 54.8
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.1e-126 457.6 441 54.9
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.5e-126 456.4 439 55.1
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 2.5e-126 456.4 439 52.8
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 9.6e-126 454.5 439 54.2
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.1e-125 453.4 436 56.0
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 8.1e-125 451.4 423 56.3
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.8e-124 450.3 427 52.9
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 3.1e-124 449.5 427 52.7
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 4.0e-124 449.1 432 55.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 4.0e-124 449.1 427 52.9
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.3e-122 444.1 432 53.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.2e-122 443.4 439 54.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.9e-122 443.0 445 51.9
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.4e-121 440.7 419 53.5
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.4e-121 439.9 436 52.3
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.1e-121 438.3 440 52.3
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.1e-121 438.3 440 52.5
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 3.5e-120 436.0 432 55.3
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 4.6e-120 435.6 429 53.6
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.0e-120 435.3 453 51.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.8e-119 433.7 445 53.0
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.5e-118 430.6 436 53.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-118 430.3 431 54.8
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 2.1e-117 426.8 436 51.6
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 4.8e-117 425.6 430 53.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 4.0e-116 422.5 430 52.1
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.3e-116 422.2 433 53.1
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 9.0e-116 421.4 427 53.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 4.5e-115 419.1 432 53.0
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 7.6e-115 418.3 423 52.0
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.9e-114 416.4 427 53.4
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.9e-114 416.4 427 52.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 3.8e-114 416.0 430 50.7
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.4e-114 414.8 430 52.1
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.1e-113 414.5 431 50.8
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.9e-113 413.7 432 52.5
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.5e-113 413.3 429 49.9
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-113 413.3 430 51.9
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 5.5e-113 412.1 424 52.6
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 7.1e-113 411.8 435 49.9
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.1e-113 411.8 438 50.9
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 9.3e-113 411.4 432 51.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 3.5e-112 409.5 458 47.6
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.6e-112 409.1 429 50.8
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.6e-112 409.1 443 49.0
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 6.0e-112 408.7 432 48.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.0e-112 408.7 418 53.1
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-111 407.5 429 50.6
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 3.0e-111 406.4 491 46.4
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.9e-111 406.0 420 53.3
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.7e-111 405.2 426 50.7
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 8.7e-111 404.8 444 49.1
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.7e-111 404.8 433 52.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.5e-110 404.1 455 48.4
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 4.3e-110 402.5 426 52.6
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 9.6e-110 401.4 469 47.3
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.6e-109 400.6 340 57.9
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 4.8e-109 399.1 436 49.1
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.2e-109 398.3 437 50.1
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-108 397.9 427 51.3
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.8e-108 397.1 436 49.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 4.1e-108 396.0 424 49.8
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.1e-108 396.0 432 50.5
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 5.3e-108 395.6 435 50.6
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 9.0e-108 394.8 437 50.3
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.2e-107 394.4 423 50.8
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.4e-107 392.9 427 48.2
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 4.5e-107 392.5 427 48.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 5.9e-107 392.1 428 49.8
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.3e-106 391.0 441 49.2
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.5e-106 388.3 439 49.7
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 7.2e-105 385.2 430 49.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.6e-104 384.0 433 47.6
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.1e-104 383.6 435 46.4
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 3.6e-104 382.9 430 49.5
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 4.6e-104 382.5 430 49.5
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.8e-101 372.5 542 41.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.4e-100 370.2 364 50.5
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 4.5e-99 365.9 423 49.6
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 5.9e-99 365.5 454 45.2
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.8e-98 362.8 433 47.8
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.1e-97 361.3 422 46.2
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.0e-95 354.8 406 49.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.0e-94 350.5 418 48.8
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 7.4e-94 348.6 438 46.3
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 9.7e-94 348.2 430 45.6
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 9.7e-94 348.2 376 51.9
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.7e-93 347.4 434 46.5
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 9.1e-92 341.7 412 48.5
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.0e-91 340.5 429 44.8
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.0e-91 340.5 421 43.9
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.4e-91 339.7 422 46.0
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.8e-90 336.3 285 57.2
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 6.5e-90 335.5 429 45.2
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 6.5e-90 335.5 431 43.2
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.9e-89 334.0 267 60.7
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.1e-88 330.5 423 43.0
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-86 323.9 252 60.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-86 323.9 252 60.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-86 323.9 262 59.5
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 6.3e-85 318.9 263 62.7
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.6e-78 297.0 267 56.9
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.8e-71 272.3 315 50.8
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 7.2e-65 252.3 415 38.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.2e-64 251.5 432 38.0
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.6e-51 206.5 424 34.2
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-50 204.5 217 47.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.7e-45 188.0 434 32.9
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 5.4e-44 183.0 449 31.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.2e-43 181.8 427 31.9
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 5.6e-41 172.9 254 37.4
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 3.4e-38 163.7 136 52.9
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 7.1e-36 156.0 144 56.9
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.2e-36 155.6 293 37.9
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.6e-35 153.3 248 37.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.3e-33 146.7 310 35.8
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 4.9e-29 133.3 190 42.6
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-28 132.1 184 43.5
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-26 124.4 106 53.8
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-23 114.4 114 51.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.4e-23 114.4 114 51.8
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.9e-21 107.5 197 43.1
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.4e-21 105.9 99 51.5
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.1e-20 105.5 166 41.0
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.9e-20 104.8 192 29.7
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 4.2e-20 103.6 237 28.7
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.6e-19 101.7 74 62.2
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 5.6e-17 93.2 302 25.5
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 8.1e-16 89.4 251 27.5
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 4.5e-14 83.6 294 24.5
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.8e-14 83.2 142 45.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.8e-14 83.2 112 49.1
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.9e-13 80.9 101 49.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 9.3e-12 75.9 120 34.2
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.5e-11 73.9 143 41.3
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 2.1e-08 64.7 200 32.5
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 2.1e-08 64.7 69 43.5


User provided reference genes

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