Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 3.6e-126 454.9 228 100.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 8.4e-91 337.4 228 74.6
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.3e-80 303.5 219 69.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 6.9e-77 291.2 228 64.0
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 9.4e-66 254.2 221 57.5
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 1.1e-63 247.3 217 58.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.5e-63 246.9 219 59.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.0e-63 246.5 234 56.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.0e-63 246.5 208 58.2
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 4.4e-63 245.4 219 56.2
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 6.3e-62 241.5 217 57.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 8.2e-62 241.1 220 55.9
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.4e-61 240.4 219 55.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.4e-61 239.6 208 57.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.3e-61 238.4 218 55.5
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.3e-61 238.4 221 54.3
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 5.3e-61 238.4 221 54.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.0e-60 236.5 218 53.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.0e-59 234.2 217 55.8
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.0e-59 234.2 224 53.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.2e-59 233.0 216 53.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.8e-59 232.3 216 53.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.1e-58 230.7 210 58.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.2e-58 228.8 213 54.9
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 7.2e-58 228.0 226 53.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 7.2e-58 228.0 213 54.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 7.2e-58 228.0 215 51.6
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 9.4e-58 227.6 198 57.1
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 9.4e-58 227.6 224 49.6
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 9.4e-58 227.6 217 54.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 9.4e-58 227.6 222 53.2
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.2e-57 227.3 218 51.4
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.2e-57 227.3 233 48.9
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.6e-57 226.9 253 50.2
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.1e-57 226.5 224 53.6
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.7e-57 226.1 222 51.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.6e-57 225.7 218 55.0
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 3.6e-57 225.7 230 49.6
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 6.1e-57 224.9 221 55.7
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 6.1e-57 224.9 214 52.3
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.4e-56 223.8 229 51.1
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.3e-56 223.0 191 56.5
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.3e-56 223.0 243 49.0
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.3e-56 223.0 227 52.0
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.9e-56 222.2 210 53.8
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 6.7e-56 221.5 230 48.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.6e-55 219.5 253 47.4
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.7e-55 217.6 213 52.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-54 216.9 222 51.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.2e-54 216.5 209 52.6
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.2e-54 216.5 211 51.2
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.2e-54 216.5 215 49.3
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.2e-54 216.5 209 51.7
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.8e-54 216.1 210 53.8
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 8.2e-54 214.5 213 49.8
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 8.2e-54 214.5 221 52.0
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-53 214.2 213 49.3
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.1e-53 214.2 212 52.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-53 213.8 219 50.7
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.4e-53 213.8 208 54.3
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.4e-53 213.8 211 55.9
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-53 213.8 224 53.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.4e-53 213.8 197 51.8
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.8e-53 213.4 206 53.4
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.4e-53 213.0 213 48.8
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 7.0e-53 211.5 219 49.8
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.6e-52 209.5 221 50.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.6e-52 209.5 219 47.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 5.9e-52 208.4 209 51.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 7.7e-52 208.0 209 50.7
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.0e-51 207.6 210 50.0
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.2e-51 206.5 223 47.5
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.2e-51 206.5 199 51.3
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.9e-51 206.1 198 50.5
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.9e-51 206.1 209 52.2
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.9e-51 206.1 199 51.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.8e-51 205.7 209 50.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.8e-51 205.7 252 48.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.8e-51 205.7 215 51.6
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.0e-51 205.3 213 49.8
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.5e-51 204.9 198 48.5
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 8.5e-51 204.5 210 54.3
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.5e-50 203.8 215 48.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.5e-50 203.0 252 49.2
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 3.2e-50 202.6 214 49.5
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-50 202.2 210 51.9
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-50 202.2 209 50.2
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 4.2e-50 202.2 210 47.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.5e-50 201.8 209 50.2
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 5.5e-50 201.8 210 49.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.5e-50 201.8 215 49.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.2e-50 201.4 226 48.2
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.2e-49 200.7 215 51.2
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.2e-49 200.7 230 47.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.2e-49 200.7 210 48.1
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.1e-49 199.9 209 49.8
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.7e-49 199.5 210 50.0
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.7e-49 198.7 209 49.8
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 4.7e-49 198.7 210 50.0
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 4.7e-49 198.7 215 50.2
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-48 197.2 215 50.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.3e-48 196.4 211 50.2
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.2e-48 195.3 222 44.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 5.2e-48 195.3 210 50.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.4e-47 192.6 209 48.3
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.4e-47 192.2 217 46.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 4.4e-47 192.2 222 47.3
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.7e-47 191.8 198 49.0
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.5e-47 191.4 214 45.3
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 9.8e-47 191.0 207 47.8
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.7e-46 189.1 187 52.4
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.8e-46 188.7 261 40.6
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 8.3e-46 188.0 211 45.5
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.1e-45 187.6 219 43.4
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.1e-45 187.6 210 47.1
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.1e-45 187.6 210 47.1
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-45 187.6 211 48.3
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 2.7e-44 183.0 224 46.4
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.5e-44 182.6 210 47.6
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 5.9e-44 181.8 210 46.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 5.9e-44 181.8 163 55.2
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.3e-43 180.6 202 45.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.2e-43 179.9 217 45.2
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-43 179.9 210 47.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.9e-43 179.5 206 45.6
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 3.8e-43 179.1 202 44.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 5.0e-43 178.7 196 50.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 6.5e-43 178.3 214 44.4
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 6.5e-43 178.3 213 45.1
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 5.5e-42 175.3 182 49.5
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.2e-41 174.1 195 47.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 8.0e-41 171.4 201 41.8
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-40 170.6 198 45.5
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 3.0e-40 169.5 229 41.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 4.0e-40 169.1 142 55.6
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.4e-39 166.0 220 43.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 5.7e-39 165.2 220 43.6
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-38 163.7 211 44.1
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.8e-38 162.9 211 43.1
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-37 160.2 211 42.7
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.6e-36 157.1 218 40.8
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 2.0e-36 156.8 200 41.5
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.0e-36 156.8 217 40.1
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.0e-36 156.8 217 40.1
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 3.5e-36 156.0 207 41.1
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.5e-36 156.0 210 42.4
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.6e-35 151.8 196 41.3
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.6e-35 151.4 187 44.9
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.8e-33 146.4 142 51.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 6.1e-33 145.2 211 41.2
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 4.0e-32 142.5 211 40.8
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.3e-30 137.5 209 38.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 4.1e-29 132.5 253 34.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 4.6e-28 129.0 144 45.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.9e-28 128.6 148 43.2
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-26 124.4 217 36.4
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.7e-25 119.0 199 36.7
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.4e-24 117.5 145 41.4
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.0e-24 115.9 145 41.4
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.9e-24 114.8 161 40.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 1.1e-21 107.8 254 30.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.1e-21 105.9 181 34.3
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.2e-15 87.8 72 59.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.9e-13 80.5 159 32.1
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 6.0e-12 75.5 111 39.6
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 5.6e-10 68.9 116 36.2
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.2e-09 67.8 67 52.2
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.1e-08 64.7 63 52.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.8e-08 63.9 73 46.6
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 3.1e-08 63.2 116 34.5
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 1.2e-07 61.2 69 43.5
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.0e-07 60.5 56 53.6
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 9.9e-07 58.2 56 51.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.3e-06 57.8 74 43.2
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.2e-06 57.0 73 43.8
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.7e-06 56.2 77 41.6
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 3.7e-06 56.2 56 50.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.4e-06 55.5 77 40.3
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.4e-06 55.1 77 41.6


User provided reference genes

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