Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0349221 Helianthus annuus HOM05D003260 ORTHO05D003651 7.5e-52 206.8 100 100.0
HanXRQChr10g0288341 Helianthus annuus HOM05D003260 ORTHO05D003651 2.4e-37 158.7 116 72.4
HanXRQChr06g0174191 Helianthus annuus HOM05D003260 ORTHO05D003651 9.6e-31 136.7 105 68.6
HanXRQChr17g0539071 Helianthus annuus HOM05D003260 ORTHO05D003651 6.2e-30 134.0 105 65.7
Lsat_1_v5_gn_3_25841 Lactuca sativa HOM05D003260 ORTHO05D003651 1.4e-29 132.9 105 65.7
ECA246G1380 Erigeron canadensis HOM05D003260 ORTHO05D003651 1.0e-24 116.7 105 58.1
Lj3C812T21 Lonicera japonica HOM05D003260 ORTHO05D003651 6.9e-21 104.0 103 52.4
Cpa.g.sc16.128 Carica papaya HOM05D003260 ORTHO05D003651 2.9e-19 98.6 107 48.6
Zm00001eb285400 Zea mays HOM05D003260 ORTHO05D003651 2.9e-19 98.6 105 46.7
Nn3g21340 Nelumbo nucifera HOM05D003260 ORTHO05D003651 4.9e-19 97.8 105 47.6
Dinv38316 Davidia involucrata HOM05D003260 ORTHO05D003651 6.4e-19 97.4 105 48.6
ATR0706G289 Amborella trichopoda HOM05D003260 ORTHO05D003651 1.4e-18 96.3 105 45.7
HanXRQChr11g0349251 Helianthus annuus HOM05D003260 ORTHO05D003651 1.4e-18 96.3 95 60.0
Cc03_g02230 Coffea canephora HOM05D003260 ORTHO05D003651 1.9e-18 95.9 105 46.7
Thecc.04G279100 Theobroma cacao HOM05D003260 ORTHO05D003651 2.4e-18 95.5 105 48.6
Aqoxy2G03084 Aquilegia oxysepala HOM05D003260 ORTHO05D003651 3.2e-18 95.1 105 45.7
Ciclev10005298m.g Citrus clementina HOM05D003260 ORTHO05D003651 4.2e-18 94.7 105 46.7
COL.COLO4_13918 Corchorus olitorius HOM05D003260 ORTHO05D003651 4.2e-18 94.7 105 48.6
Migut.G00197 Erythranthe guttata HOM05D003260 ORTHO05D003651 4.2e-18 94.7 105 44.8
DCAR_002451 Daucus carota HOM05D003260 ORTHO05D003651 5.4e-18 94.4 105 47.6
Eucgr.H03854 Eucalyptus grandis HOM05D003260 ORTHO05D003651 5.4e-18 94.4 103 48.5
Os05g0372400 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 5.4e-18 94.4 105 43.8
Gorai.005G057700 Gossypium raimondii HOM05D003260 ORTHO05D003651 7.1e-18 94.0 105 48.6
SGA_v2.0_scaffold62G21598 Striga asiatica HOM05D003260 ORTHO05D003651 7.1e-18 94.0 105 46.7
CSS0013073 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 9.3e-18 93.6 105 45.7
CSS0024611 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 9.3e-18 93.6 105 45.7
Cfa015352 Carpinus fangiana HOM05D003260 ORTHO05D003651 9.3e-18 93.6 105 46.7
Eucgr.B01272 Eucalyptus grandis HOM05D003260 ORTHO05D003651 9.3e-18 93.6 103 47.6
Eucgr.L01655 Eucalyptus grandis HOM05D003260 ORTHO05D003651 9.3e-18 93.6 103 47.6
Gohir.D02G052400 Gossypium hirsutum HOM05D003260 ORTHO05D003651 9.3e-18 93.6 105 48.6
Manes.03G191800 Manihot esculenta HOM05D003260 ORTHO05D003651 9.3e-18 93.6 105 47.6
TWI73G0946 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.2e-17 93.2 105 47.6
DCAR_024550 Daucus carota HOM05D003260 ORTHO05D003651 1.6e-17 92.8 105 47.6
Duzib212G0515 Durio zibethinus HOM05D003260 ORTHO05D003651 2.1e-17 92.4 105 46.7
MD16G1174000 Malus domestica HOM05D003260 ORTHO05D003651 2.1e-17 92.4 105 46.7
Potri.010G019500 Populus trichocarpa HOM05D003260 ORTHO05D003651 2.1e-17 92.4 105 45.7
Sabra10G0010800 Salix brachista HOM05D003260 ORTHO05D003651 2.1e-17 92.4 105 44.8
TAR636G0688 Trochodendron aralioides HOM05D003260 ORTHO05D003651 2.1e-17 92.4 105 45.7
AL6G29910 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 2.7e-17 92.0 106 47.2
MSTRG.10069 Avicennia marina HOM05D003260 ORTHO05D003651 2.7e-17 92.0 105 46.7
Carub.0006s1693 Capsella rubella HOM05D003260 ORTHO05D003651 2.7e-17 92.0 106 47.2
Gohir.A02G046700 Gossypium hirsutum HOM05D003260 ORTHO05D003651 3.5e-17 91.7 105 46.7
Lalb_Chr20g0118081 Lupinus albus HOM05D003260 ORTHO05D003651 3.5e-17 91.7 105 45.7
Nn4g25978 Nelumbo nucifera HOM05D003260 ORTHO05D003651 3.5e-17 91.7 105 45.7
Rhsim04G0217500 Rhododendron simsii HOM05D003260 ORTHO05D003651 3.5e-17 91.7 105 45.7
Aa31LG11G10980 Aethionema arabicum HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
MSTRG.24781 Avicennia marina HOM05D003260 ORTHO05D003651 4.6e-17 91.3 105 44.8
BcaB08g36656 Brassica carinata HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
A10p20930 Brassica napus HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
C09p57820 Brassica napus HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
BolC9t58652H Brassica oleracea HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
BraA10t44158Z Brassica rapa HOM05D003260 ORTHO05D003651 4.6e-17 91.3 106 46.2
CiPaw.02G085700 Carya illinoinensis HOM05D003260 ORTHO05D003651 4.6e-17 91.3 105 44.8
CDE05G3633 Ceratophyllum demersum HOM05D003260 ORTHO05D003651 4.6e-17 91.3 105 44.8
Haze_01252 Corylus avellana HOM05D003260 ORTHO05D003651 4.6e-17 91.3 111 44.1
Duzib052G0697 Durio zibethinus HOM05D003260 ORTHO05D003651 4.6e-17 91.3 105 47.6
Glyma.13G215800 Glycine max HOM05D003260 ORTHO05D003651 4.6e-17 91.3 105 45.7
CANSAT78G2310 Cannabis sativa HOM05D003260 ORTHO05D003651 6.0e-17 90.9 105 43.8
Manes.15G015900 Manihot esculenta HOM05D003260 ORTHO05D003651 6.0e-17 90.9 105 45.7
TWI09G1509 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 6.0e-17 90.9 105 45.7
AT5G18640 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 7.9e-17 90.5 106 46.2
arahy.Tifrunner.gnm1.ann1.CF3NAW Arachis hypogaea HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 44.8
arahy.Tifrunner.gnm1.ann1.S8T7D3 Arachis hypogaea HOM05D003260 ORTHO05D003651 7.9e-17 90.5 107 45.8
FAN23G1699 Fragaria x ananassa HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 47.6
Glyma.15G097100 Glycine max HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 45.7
MD13G1172600 Malus domestica HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 45.7
Nitab4.5_0002986g0110 Nicotiana tabacum HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 42.9
TAR633G2100 Trochodendron aralioides HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 46.7
GSVIVG01017792001 Vitis vinifera HOM05D003260 ORTHO05D003651 7.9e-17 90.5 105 42.9
ClCG05G005890 Citrullus lanatus HOM05D003260 ORTHO05D003651 1.0e-16 90.1 105 46.7
PGR004G1032 Punica granatum HOM05D003260 ORTHO05D003651 1.0e-16 90.1 105 43.8
CSS0042129 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 43.8
Cc11_g03960 Coffea canephora HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 44.8
FvH4_4g17380 Fragaria vesca HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 45.7
FAN12G0747 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 45.7
LjContig00389g0009808 Lotus japonicus HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 43.8
PGR031G2101 Punica granatum HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 46.7
vmacro08190 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 1.3e-16 89.7 105 44.8
CsaV3_6G005740 Cucumis sativus L. HOM05D003260 ORTHO05D003651 1.8e-16 89.4 105 44.8
FAN28G1362 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.8e-16 89.4 105 46.7
Hma1.2p1_0078F.1_g040770 Hydrangea macrophylla HOM05D003260 ORTHO05D003651 1.8e-16 89.4 105 42.9
PGSC0003DMG400030761 Solanum tuberosum HOM05D003260 ORTHO05D003651 1.8e-16 89.4 105 42.9
THA.LOC104802724 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 1.8e-16 89.4 105 45.7
Actinidia23419 Actinidia chinensis HOM05D003260 ORTHO05D003651 2.3e-16 89.0 105 45.7
Gohir.D09G061000 Gossypium hirsutum HOM05D003260 ORTHO05D003651 2.3e-16 89.0 105 46.7
Gorai.006G075600 Gossypium raimondii HOM05D003260 ORTHO05D003651 2.3e-16 89.0 105 46.7
Peaxi162Scf00033g01320 Petunia axillaris HOM05D003260 ORTHO05D003651 2.3e-16 89.0 103 44.7
QL06p007594 Quercus lobata HOM05D003260 ORTHO05D003651 2.3e-16 89.0 101 44.6
Rhsim02G0012700 Rhododendron simsii HOM05D003260 ORTHO05D003651 2.3e-16 89.0 99 43.4
RcHm_v2.0_Chr2g0123761 Rosa chinensis HOM05D003260 ORTHO05D003651 2.3e-16 89.0 105 45.7
Sopen01g029260 Solanum pennellii HOM05D003260 ORTHO05D003651 2.3e-16 89.0 105 44.8
FvH4_1g25590 Fragaria vesca HOM05D003260 ORTHO05D003651 3.0e-16 88.6 105 46.7
FAN19G0011 Fragaria x ananassa HOM05D003260 ORTHO05D003651 3.0e-16 88.6 105 46.7
Nitab4.5_0000829g0170 Nicotiana tabacum HOM05D003260 ORTHO05D003651 3.0e-16 88.6 105 41.9
Sp6g25700 Schrenkiella parvula HOM05D003260 ORTHO05D003651 3.0e-16 88.6 106 45.3
vmacro15254 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 3.0e-16 88.6 106 43.4
VMungo0540G0576 Vigna mungo HOM05D003260 ORTHO05D003651 3.0e-16 88.6 105 42.9
Zm00001eb141920 Zea mays HOM05D003260 ORTHO05D003651 3.0e-16 88.6 105 41.0
MELO3C021361.2 Cucumis melo HOM05D003260 ORTHO05D003651 3.9e-16 88.2 105 43.8
PSO170G5597 Papaver somniferum HOM05D003260 ORTHO05D003651 3.9e-16 88.2 101 46.5
Phvul.006G162100 Phaseolus vulgaris HOM05D003260 ORTHO05D003651 3.9e-16 88.2 105 42.9
Solyc06g054550.3 Solanum lycopersicum HOM05D003260 ORTHO05D003651 3.9e-16 88.2 105 42.9
EL10Ac3g06566 Beta vulgaris HOM05D003260 ORTHO05D003651 5.1e-16 87.8 105 41.9
FAN17G1896 Fragaria x ananassa HOM05D003260 ORTHO05D003651 5.1e-16 87.8 105 45.7
Gohir.A09G062100 Gossypium hirsutum HOM05D003260 ORTHO05D003651 5.1e-16 87.8 105 45.7
Sed0005192 Sechium edule HOM05D003260 ORTHO05D003651 5.1e-16 87.8 105 44.8
Sopen01g029270 Solanum pennellii HOM05D003260 ORTHO05D003651 5.1e-16 87.8 105 43.8
CAN.G556.1 Capsicum annuum HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 41.9
CARHR194370 Cardamine hirsuta HOM05D003260 ORTHO05D003651 6.7e-16 87.4 106 45.3
Peaxi162Scf00386g00812 Petunia axillaris HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 43.8
RcHm_v2.0_Chr4g0421311 Rosa chinensis HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 44.8
Hund20592 Selenicereus undatus HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 42.9
Sopen06g019620 Solanum pennellii HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 42.9
THA.LOC104827117 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 6.7e-16 87.4 105 43.8
CAN.G256.11 Capsicum annuum HOM05D003260 ORTHO05D003651 8.7e-16 87.0 105 41.9
MELO3C006617.2 Cucumis melo HOM05D003260 ORTHO05D003651 8.7e-16 87.0 105 44.8
BcaB05g23343 Brassica carinata HOM05D003260 ORTHO05D003651 1.1e-15 86.7 104 44.2
CARHR194390 Cardamine hirsuta HOM05D003260 ORTHO05D003651 1.1e-15 86.7 106 44.3
Ca_00565_v3 Cicer arietinum L. HOM05D003260 ORTHO05D003651 1.1e-15 86.7 105 42.9
ClCG06G005380 Citrullus lanatus HOM05D003260 ORTHO05D003651 1.1e-15 86.7 105 43.8
Sed0004895 Sechium edule HOM05D003260 ORTHO05D003651 1.1e-15 86.7 105 43.8
Zm00001eb330150 Zea mays HOM05D003260 ORTHO05D003651 1.5e-15 86.3 105 41.9
Actinidia14317 Actinidia chinensis HOM05D003260 ORTHO05D003651 1.9e-15 85.9 103 43.7
CiPaw.01G152200 Carya illinoinensis HOM05D003260 ORTHO05D003651 1.9e-15 85.9 101 43.6
CsaV3_3G014240 Cucumis sativus L. HOM05D003260 ORTHO05D003651 1.9e-15 85.9 105 44.8
Sp6g25695 Schrenkiella parvula HOM05D003260 ORTHO05D003651 1.9e-15 85.9 106 43.4
BcaC03g13614 Brassica carinata HOM05D003260 ORTHO05D003651 2.5e-15 85.5 104 44.2
BolC2t06910H Brassica oleracea HOM05D003260 ORTHO05D003651 2.5e-15 85.5 104 44.2
BraA02t05463Z Brassica rapa HOM05D003260 ORTHO05D003651 2.5e-15 85.5 104 44.2
Eucgr.H03839 Eucalyptus grandis HOM05D003260 ORTHO05D003651 2.5e-15 85.5 103 47.6
TWI53G0545 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 2.5e-15 85.5 105 44.8
TWI53G1343 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 2.5e-15 85.5 105 44.8
AUR62041197 Chenopodium quinoa HOM05D003260 ORTHO05D003651 3.3e-15 85.1 105 40.0
FAN22G0635 Fragaria x ananassa HOM05D003260 ORTHO05D003651 3.3e-15 85.1 94 44.7
Lj6A670G77 Lonicera japonica HOM05D003260 ORTHO05D003651 3.3e-15 85.1 130 40.8
Nitab4.5_0001054g0020 Nicotiana tabacum HOM05D003260 ORTHO05D003651 3.3e-15 85.1 115 41.7
Os01g0936200 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 4.3e-15 84.7 105 39.0
C02p10110 Brassica napus HOM05D003260 ORTHO05D003651 5.6e-15 84.3 104 43.3
Os07g0668700 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 5.6e-15 84.3 105 41.0
Sc13g0003570 Simmondsia chinensis HOM05D003260 ORTHO05D003651 5.6e-15 84.3 105 40.0
A02p05060 Brassica napus HOM05D003260 ORTHO05D003651 7.4e-15 84.0 104 43.3
PGSC0003DMG400022655 Solanum tuberosum HOM05D003260 ORTHO05D003651 7.4e-15 84.0 105 41.9
BraA02t05464Z Brassica rapa HOM05D003260 ORTHO05D003651 9.6e-15 83.6 107 43.9
Carub.0006s1691 Capsella rubella HOM05D003260 ORTHO05D003651 9.6e-15 83.6 104 42.3
Psat1g187440 Pisum sativum HOM05D003260 ORTHO05D003651 9.6e-15 83.6 105 41.9
AT5G18630 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 1.3e-14 83.2 106 41.5
Thhalv10013941m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 1.3e-14 83.2 106 43.4
Thhalv10013982m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 2.1e-14 82.4 104 42.3
Lalb_Chr18g0055681 Lupinus albus HOM05D003260 ORTHO05D003651 2.1e-14 82.4 105 43.8
Nitab4.5_0001459g0100 Nicotiana tabacum HOM05D003260 ORTHO05D003651 2.8e-14 82.0 86 46.5
AL6G29900 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 3.7e-14 81.6 102 42.2
TPR.G1488 Trifolium pratense HOM05D003260 ORTHO05D003651 3.7e-14 81.6 105 41.9
TPR.G1524 Trifolium pratense HOM05D003260 ORTHO05D003651 3.7e-14 81.6 105 40.0
Medtr2g020020 Medicago truncatula HOM05D003260 ORTHO05D003651 4.8e-14 81.3 105 41.0
SalBow2G1465 Salvia bowleyana HOM05D003260 ORTHO05D003651 8.1e-14 80.5 105 40.0
HPP92_003149 Vanilla planifolia HOM05D003260 ORTHO05D003651 1.1e-13 80.1 105 38.1
Pp3c5_26430 Physcomitrium patens HOM05D003260 ORTHO05D003651 1.4e-13 79.7 105 38.1
BolC2t06911H Brassica oleracea HOM05D003260 ORTHO05D003651 1.8e-13 79.3 107 43.0
Os11g0655800 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 2.4e-13 79.0 103 43.7
Zm00001eb165770 Zea mays HOM05D003260 ORTHO05D003651 2.4e-13 79.0 103 42.7
Prupe.1G140800 Prunus persica HOM05D003260 ORTHO05D003651 3.1e-13 78.6 133 36.8
SMO115G0037 Selaginella moellendorffii HOM05D003260 ORTHO05D003651 4.0e-13 78.2 103 36.9
Pp3c25_13720 Physcomitrium patens HOM05D003260 ORTHO05D003651 5.3e-13 77.8 105 39.0
Solyc01g067380.4 Solanum lycopersicum HOM05D003260 ORTHO05D003651 6.9e-13 77.4 86 43.0
FAN12G1680 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.2e-12 76.6 108 38.9
Mapoly0030s0070 Marchantia polymorpha HOM05D003260 ORTHO05D003651 1.5e-12 76.3 105 39.0
Pp3c7_2230 Physcomitrium patens HOM05D003260 ORTHO05D003651 3.4e-12 75.1 105 36.2
AagrBONN_evm.TU.Sc2ySwM_344.569 Anthoceros agrestis HOM05D003260 ORTHO05D003651 4.5e-12 74.7 88 40.9
AUR62043024 Chenopodium quinoa HOM05D003260 ORTHO05D003651 1.0e-11 73.6 118 34.7
Actinidia14316 Actinidia chinensis HOM05D003260 ORTHO05D003651 2.9e-11 72.0 99 44.4
BcaB05g23344 Brassica carinata HOM05D003260 ORTHO05D003651 2.9e-11 72.0 124 36.3
Eucgr.H03843 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.4e-10 69.7 57 52.6
SMO340G0303 Selaginella moellendorffii HOM05D003260 ORTHO05D003651 1.4e-10 69.7 88 38.6
Actinidia40234 Actinidia chinensis HOM05D003260 ORTHO05D003651 3.2e-10 68.6 57 52.6
HanXRQChr01g0003091 Helianthus annuus HOM05D003260 ORTHO05D003651 3.2e-10 68.6 39 84.6
Actinidia08303 Actinidia chinensis HOM05D003260 ORTHO05D003651 2.7e-09 65.5 107 38.3
Oeu044781.1 Olea europaea HOM05D003260 ORTHO05D003651 7.9e-09 63.9 57 45.6
Zm00001eb016740 Zea mays HOM05D003260 ORTHO05D003651 2.3e-08 62.4 92 35.9
HanXRQChr12g0381381 Helianthus annuus HOM05D003260 ORTHO05D003651 3.3e-07 58.5 34 82.4
Eucgr.H03849 Eucalyptus grandis HOM05D003260 ORTHO05D003651 4.3e-07 58.2 81 37.0
Eucgr.L03707 Eucalyptus grandis HOM05D003260 ORTHO05D003651 9.6e-07 57.0 87 35.6


User provided reference genes

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