Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 6.5e-117 424.1 218 100.0
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.9e-96 354.8 220 85.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 9.2e-95 350.5 219 83.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.2e-90 334.7 212 83.0
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 3.3e-84 315.5 216 74.1
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-83 313.5 222 72.5
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.6e-83 313.2 216 73.6
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.1e-83 312.8 219 75.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.8e-83 312.4 213 74.6
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 2.8e-83 312.4 219 74.0
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 6.2e-83 311.2 220 72.7
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 8.1e-83 310.8 218 74.8
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 8.1e-83 310.8 219 74.0
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 2.3e-82 309.3 210 75.2
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.1e-82 308.9 217 74.7
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 4.0e-82 308.5 211 73.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 6.8e-82 307.8 219 73.5
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.2e-81 307.0 216 74.1
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.4e-81 305.4 217 73.3
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.4e-81 305.4 219 71.7
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.4e-81 305.1 228 69.3
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.4e-81 305.1 213 72.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.6e-81 304.3 217 72.8
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 7.6e-81 304.3 214 72.4
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 9.9e-81 303.9 220 69.5
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 9.9e-81 303.9 222 69.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.9e-81 303.9 213 72.8
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-80 303.5 216 70.8
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.7e-80 303.1 214 69.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.2e-80 302.8 207 73.9
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.9e-80 302.4 210 71.9
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.9e-80 301.6 220 71.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.9e-80 301.6 222 70.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.1e-79 300.4 215 71.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.4e-79 300.1 214 72.0
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.9e-79 299.7 214 72.0
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.4e-79 299.3 214 70.6
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.4e-79 299.3 215 69.8
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 3.2e-79 298.9 209 74.2
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 5.4e-79 298.1 217 69.1
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.4e-79 298.1 215 68.4
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 7.1e-79 297.7 222 70.7
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 7.1e-79 297.7 225 68.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 7.1e-79 297.7 204 73.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 7.1e-79 297.7 204 75.0
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 9.2e-79 297.4 215 69.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 9.2e-79 297.4 222 69.4
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 9.2e-79 297.4 214 71.0
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-78 296.6 212 69.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.6e-78 296.6 204 73.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 2.1e-78 296.2 215 71.2
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.7e-78 295.8 222 69.8
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.6e-78 295.0 219 71.7
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 4.6e-78 295.0 222 68.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 6.0e-78 294.7 222 69.8
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.8e-78 294.3 217 68.7
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 7.8e-78 294.3 215 69.3
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 7.8e-78 294.3 218 68.3
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-77 293.9 213 70.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.3e-77 293.5 217 67.7
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.3e-77 293.5 221 66.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.0e-77 292.4 220 69.1
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 3.9e-77 292.0 210 68.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 3.9e-77 292.0 217 66.8
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 5.1e-77 291.6 221 69.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 6.6e-77 291.2 207 70.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 8.6e-77 290.8 217 66.8
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 8.6e-77 290.8 218 68.8
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 8.6e-77 290.8 215 70.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.5e-76 290.0 219 66.2
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.9e-76 289.7 219 66.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.3e-76 288.9 217 67.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.3e-76 288.9 217 67.7
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.3e-76 288.9 234 63.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 4.3e-76 288.5 213 69.5
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.3e-76 288.5 214 69.2
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 4.3e-76 288.5 214 70.1
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 5.6e-76 288.1 223 66.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 7.3e-76 287.7 217 66.4
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 7.3e-76 287.7 218 67.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.2e-75 287.0 214 67.8
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.6e-75 286.6 221 67.9
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.6e-75 286.6 220 66.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-75 286.2 215 68.4
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.8e-75 285.8 213 69.5
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.6e-75 285.4 217 65.4
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 3.6e-75 285.4 214 67.3
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.6e-75 285.4 220 65.5
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 4.7e-75 285.0 216 67.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.7e-75 285.0 220 65.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 4.7e-75 285.0 238 63.4
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.2e-75 284.6 220 65.5
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 8.1e-75 284.3 242 62.8
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.4e-74 283.5 210 69.0
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-74 282.7 217 67.3
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-74 282.3 217 68.2
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 4.0e-74 282.0 217 66.4
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 4.0e-74 282.0 217 66.4
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.2e-74 281.6 214 65.4
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.2e-74 281.6 215 68.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 6.9e-74 281.2 220 65.9
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.2e-73 280.4 217 65.9
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.7e-72 276.6 212 63.2
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-72 275.8 223 64.6
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.8e-72 275.4 215 67.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-72 274.6 181 75.1
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.4e-72 274.6 181 75.1
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 8.4e-72 274.2 217 63.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.2e-71 272.3 221 67.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 5.4e-71 271.6 217 64.5
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.1e-70 269.6 277 55.6
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.7e-70 269.2 309 51.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.7e-69 266.5 241 58.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 3.3e-68 262.3 221 66.1
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 7.3e-68 261.2 214 61.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 2.8e-67 259.2 221 64.3
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 4.8e-67 258.5 170 76.5
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.8e-66 256.5 167 76.6
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.2e-64 249.6 215 65.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.9e-64 249.2 218 62.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.1e-63 247.3 209 64.6
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.1e-63 247.3 204 61.3
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 4.2e-63 245.4 207 65.2
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.2e-62 243.8 218 63.8
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 2.1e-62 243.0 214 60.3
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-61 240.0 160 73.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 3.9e-61 238.8 206 56.3
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.4e-57 225.7 215 53.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 7.6e-57 224.6 221 55.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-55 220.7 211 56.9
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 2.4e-55 219.5 173 57.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 4.6e-54 215.3 123 86.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.7e-53 211.1 157 66.9
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.5e-52 209.5 160 66.2
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.6e-51 206.8 119 85.7
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.6e-51 206.8 145 74.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-50 203.4 117 81.2
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.4e-50 203.0 200 55.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 4.0e-50 202.2 160 68.8
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.5e-49 200.3 245 42.9
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 8.4e-48 194.5 128 71.9
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.7e-46 189.5 166 59.0
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 3.0e-45 186.0 218 51.4
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 3.4e-41 172.6 104 78.8
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 4.5e-41 172.2 168 58.3
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.7e-40 170.2 213 49.3
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 9.3e-39 164.5 188 52.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 1.5e-36 157.1 188 45.7
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 2.5e-36 156.4 292 36.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.2e-31 139.4 174 47.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.4e-26 124.0 79 74.7
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.8e-26 123.6 155 47.1
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.5e-24 115.2 120 52.5
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 5.5e-23 112.1 75 70.7
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 9.4e-23 111.3 63 77.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.4e-21 107.5 163 41.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.5e-20 104.0 87 62.1
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 5.7e-20 102.1 67 76.1
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.4e-18 96.7 59 79.7
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 7.0e-18 95.1 92 57.6
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.0e-18 95.1 108 50.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 3.5e-17 92.8 172 36.6
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.7e-16 90.5 91 54.9
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 5.5e-15 85.5 137 37.2
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 7.2e-15 85.1 233 32.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 9.4e-15 84.7 91 50.5
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.6e-14 84.0 87 52.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 7.5e-12 75.1 114 39.5
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 1.3e-08 64.3 172 33.7
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.7e-08 63.9 91 41.8
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 2.2e-08 63.5 52 61.5
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.1e-06 57.0 44 70.5
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 2.1e-06 57.0 63 47.6
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 6.1e-06 55.5 41 58.5
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 8.0e-06 55.1 34 61.8


User provided reference genes

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