Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 0.0e+00 1259.2 651 100.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 4.8e-224 781.6 720 62.9
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 2.8e-216 755.7 707 62.0
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.1e-203 711.4 667 62.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 5.1e-157 558.9 689 52.5
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 9.6e-156 554.7 695 51.5
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 2.0e-153 547.0 708 50.3
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.3e-149 534.3 695 50.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 7.4e-148 528.5 694 48.4
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 8.4e-144 515.0 732 47.8
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 7.1e-143 511.9 709 48.1
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 9.3e-143 511.5 694 47.4
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 8.7e-141 505.0 664 49.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.3e-139 501.1 666 47.1
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 2.8e-139 500.0 701 47.8
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.2e-137 494.6 649 49.9
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.6e-137 493.4 599 52.6
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.6e-137 493.4 599 52.6
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 5.8e-137 492.3 720 47.8
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.3e-136 491.1 711 48.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.9e-136 490.0 598 52.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.9e-136 489.2 707 46.3
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 6.5e-136 488.8 672 47.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 6.5e-136 488.8 526 56.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.5e-136 488.8 718 46.4
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.5e-134 483.0 624 48.9
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 6.0e-134 482.3 711 46.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.2e-131 473.8 706 46.2
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 3.7e-131 473.0 509 56.4
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 4.8e-131 472.6 752 43.4
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 8.2e-131 471.9 712 47.1
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.4e-130 470.3 627 50.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 2.4e-130 470.3 711 45.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.4e-130 470.3 735 44.9
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.3e-130 469.2 512 55.7
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.3e-130 469.2 512 55.7
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 6.9e-130 468.8 713 45.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.9e-130 468.8 498 55.2
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.2e-129 468.0 696 46.4
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 3.4e-129 466.5 611 49.4
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 3.4e-129 466.5 695 45.3
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 4.5e-129 466.1 703 45.5
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.9e-127 460.7 694 45.5
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 5.5e-127 459.1 718 46.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 7.2e-127 458.8 693 45.5
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.6e-126 456.4 702 46.3
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 6.1e-126 455.7 695 45.8
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 7.9e-126 455.3 708 45.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.9e-126 455.3 691 44.1
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 5.1e-125 452.6 711 43.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 7.4e-124 448.7 609 48.6
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.4e-124 448.7 696 46.7
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.8e-123 446.8 607 49.4
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.8e-123 446.8 608 49.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 6.3e-123 445.7 603 48.4
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.4e-121 439.9 679 45.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.3e-120 438.0 740 43.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.9e-120 436.8 733 43.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.2e-119 432.2 606 48.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 9.4e-119 431.8 700 44.9
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.7e-118 429.5 492 53.5
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.7e-118 429.5 489 53.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.0e-117 428.3 609 45.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 8.8e-117 425.2 626 46.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 9.7e-116 421.8 585 48.5
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.3e-115 419.1 700 42.1
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.2e-113 414.8 686 43.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 5.0e-112 409.5 641 45.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.5e-112 408.7 493 52.1
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 4.2e-111 406.4 709 42.0
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 7.2e-111 405.6 629 46.3
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 3.6e-110 403.3 502 51.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.1e-110 402.5 696 42.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.0e-110 402.1 693 42.4
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 5.2e-109 399.4 608 46.7
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 8.8e-109 398.7 678 42.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.7e-107 394.4 718 40.9
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 3.7e-107 393.3 709 40.9
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.4e-106 390.6 619 45.2
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 4.1e-106 389.8 490 51.2
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.5e-105 386.3 521 48.6
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.0e-104 385.2 671 42.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.7e-104 384.4 637 42.5
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.9e-103 380.9 699 41.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.2e-102 378.3 716 40.2
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 4.7e-102 376.3 705 41.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.0e-101 375.2 642 42.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.4e-101 374.8 659 40.7
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 5.2e-101 372.9 585 44.3
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 8.8e-101 372.1 650 41.7
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.6e-100 370.5 499 49.5
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 9.1e-98 362.1 724 39.5
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.9e-97 359.4 583 44.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.7e-96 357.8 642 42.8
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.9e-96 357.1 640 41.4
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 3.8e-96 356.7 588 42.7
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 8.5e-96 355.5 630 41.0
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 8.5e-96 355.5 578 43.8
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.1e-95 355.1 642 41.3
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-95 354.8 623 41.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.2e-95 353.6 601 41.9
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 7.2e-95 352.4 601 42.8
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.4e-93 348.2 640 41.1
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.4e-93 348.2 638 40.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 3.0e-93 347.1 638 41.2
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.0e-92 344.4 666 40.1
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.4e-92 343.6 640 40.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.5e-92 342.4 651 40.4
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.2e-89 335.1 582 41.8
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-89 334.3 336 59.2
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 3.5e-89 333.6 581 42.2
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 4.5e-89 333.2 497 46.7
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 5.5e-87 326.2 603 40.1
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 9.8e-84 315.5 650 39.2
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.1e-79 302.0 537 42.6
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.8e-77 294.7 565 39.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.2e-68 265.4 506 40.7
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 3.7e-67 260.4 627 37.0
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.3e-64 251.9 208 67.3
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.3e-64 251.9 499 41.1
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.3e-64 251.1 431 42.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 6.6e-64 249.6 200 68.5
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 9.5e-63 245.7 374 44.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.1e-62 244.6 423 40.0
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.7e-59 233.8 192 69.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.9e-55 221.5 731 32.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.9e-51 207.6 485 38.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.9e-51 206.8 533 38.3
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.4e-50 204.5 498 35.1
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.0e-48 199.1 393 42.5
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.3e-48 198.0 203 55.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.1e-46 191.4 215 56.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.3e-45 186.8 251 46.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.7e-43 181.8 332 43.7
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.5e-31 142.1 500 34.2
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.9e-27 127.9 439 30.1
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.8e-27 127.5 558 30.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.4e-27 126.7 90 71.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.2e-26 124.0 395 34.4
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 6.7e-24 116.7 513 33.3
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 4.0e-21 107.5 499 33.1
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.5e-20 105.5 522 31.8
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 8.4e-19 99.8 238 39.5
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.1e-18 99.4 483 31.1
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 6.3e-14 83.6 72 63.9
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-12 79.0 290 28.3
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 2.0e-12 78.6 505 30.5
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.2e-10 70.9 252 31.3
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 9.7e-07 59.7 112 46.4


User provided reference genes

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