Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 0.0e+00 1243.0 641 100.0
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 5.9e-182 641.7 697 57.4
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.0e-138 498.0 729 48.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.7e-136 490.7 698 49.7
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 7.4e-84 315.8 655 40.8
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.2e-81 308.5 535 43.4
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.3e-75 288.5 623 38.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 6.5e-72 276.2 483 41.6
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.1e-69 266.5 558 37.1
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.4e-66 257.7 501 39.5
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 9.4e-63 245.7 492 38.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.4e-61 241.9 561 36.5
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 8.8e-61 239.2 506 37.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.8e-61 239.2 506 37.0
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.6e-60 237.7 517 36.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 3.3e-60 237.3 557 35.4
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.7e-59 235.0 499 37.7
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.8e-59 234.2 524 36.8
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.7e-59 233.8 668 33.4
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.8e-59 233.4 669 33.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.1e-58 230.7 578 36.0
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 3.1e-58 230.7 501 36.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.2e-57 228.8 506 36.8
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 5.9e-57 226.5 528 35.8
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.9e-57 226.5 508 36.8
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 7.7e-57 226.1 634 34.7
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.2e-56 224.6 511 36.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.8e-56 223.8 687 31.6
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 5.0e-56 223.4 636 33.6
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.1e-55 222.2 493 37.5
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.1e-55 222.2 535 35.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.9e-55 221.5 569 34.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.2e-55 220.7 450 37.6
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 3.2e-55 220.7 510 35.9
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.2e-55 220.7 478 36.6
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.5e-55 219.9 364 43.1
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 9.4e-55 219.2 547 34.7
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.6e-54 218.4 501 36.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.6e-54 218.4 570 35.3
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 8.0e-54 216.1 589 34.8
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.0e-53 215.7 476 36.3
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.3e-53 214.5 439 38.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.3e-53 214.5 744 31.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.7e-53 213.0 487 37.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 6.7e-53 213.0 727 31.5
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 8.8e-53 212.6 553 34.7
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.5e-52 211.8 487 36.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 2.6e-52 211.1 561 34.9
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.7e-52 209.9 487 36.6
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.7e-52 209.9 605 32.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.3e-51 208.8 528 36.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.8e-51 207.6 456 36.6
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.8e-51 206.8 526 33.8
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 6.3e-51 206.5 721 31.9
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.1e-50 205.7 460 36.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.4e-50 205.3 666 31.1
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.1e-50 204.1 420 37.9
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 4.1e-50 203.8 750 29.9
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 2.0e-49 201.4 552 33.9
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.6e-49 201.1 349 41.0
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 3.5e-49 200.7 435 37.0
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.5e-49 200.3 712 30.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.7e-49 199.5 465 38.5
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 5.0e-48 196.8 467 38.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 4.2e-47 193.7 620 33.9
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 9.4e-47 192.6 469 38.0
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.2e-46 192.2 556 33.1
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.7e-46 191.0 503 33.8
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-45 188.7 535 33.6
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 2.3e-45 188.0 505 35.2
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.0e-45 187.6 507 35.5
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.0e-45 187.6 406 36.2
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.8e-45 186.4 616 31.5
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.2e-44 185.7 509 33.2
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.5e-44 185.3 353 40.5
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.0e-44 184.9 473 33.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 3.4e-44 184.1 494 34.4
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 7.5e-44 183.0 494 34.8
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 7.5e-44 183.0 494 34.8
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 9.7e-44 182.6 377 36.6
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 9.7e-44 182.6 314 41.7
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.7e-43 181.8 454 34.8
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.2e-43 181.4 491 34.4
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.8e-43 181.0 250 46.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.8e-43 181.0 530 32.8
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.1e-42 179.1 377 35.3
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.1e-42 177.6 447 34.7
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.6e-41 175.3 374 36.9
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 4.5e-41 173.7 568 31.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 4.5e-41 173.7 550 32.9
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 4.5e-41 173.7 462 32.9
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.3e-40 172.2 500 33.8
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.2e-40 171.4 558 31.0
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 5.0e-40 170.2 508 32.7
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.5e-40 169.9 704 30.3
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.5e-39 168.7 449 33.4
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.2e-39 167.2 326 39.3
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.5e-39 166.8 403 36.0
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 7.2e-39 166.4 508 31.9
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 3.6e-38 164.1 728 31.2
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 8.0e-38 162.9 524 32.1
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 8.0e-38 162.9 378 33.6
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.0e-37 162.5 502 32.7
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.8e-37 161.8 490 32.2
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.8e-37 161.8 577 32.1
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.0e-36 158.3 682 28.7
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 8.3e-35 152.9 243 40.7
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.4e-34 151.4 387 35.1
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 5.9e-33 146.7 356 34.3
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.0e-32 146.0 507 31.6
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.6e-32 143.3 572 30.1
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.2e-31 139.8 630 30.2
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-30 139.0 342 34.8
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.2e-30 139.0 431 33.2
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-29 136.0 348 34.8
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 4.0e-29 134.0 403 31.8
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 4.0e-29 134.0 388 32.5
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 5.2e-29 133.7 361 31.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.5e-28 132.1 389 33.4
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 3.4e-28 131.0 389 32.1
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 3.4e-28 131.0 337 34.7
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 4.4e-28 130.6 347 33.7
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.4e-28 130.6 403 31.3
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 7.5e-28 129.8 360 33.3
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 7.5e-28 129.8 399 32.1
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 7.5e-28 129.8 399 32.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.5e-28 129.8 586 27.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 9.8e-28 129.4 442 30.1
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.7e-27 128.6 359 33.7
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.7e-27 128.6 469 33.0
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 3.7e-27 127.5 513 29.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 3.7e-27 127.5 365 32.6
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 4.9e-27 127.1 348 33.3
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 6.3e-27 126.7 340 33.2
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 6.3e-27 126.7 340 33.2
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 8.3e-27 126.3 362 32.9
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.1e-26 125.9 397 33.2
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-26 125.9 466 33.3
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 3.2e-26 124.4 486 29.2
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 4.1e-26 124.0 469 32.4
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 7.0e-26 123.2 339 32.2
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.2e-25 122.5 360 32.5
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 2.0e-25 121.7 491 29.5
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 2.0e-25 121.7 491 29.5
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 3.9e-24 117.5 633 27.3
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 9.5e-23 112.8 632 27.7
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 9.5e-23 112.8 596 28.2
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 6.1e-22 110.2 682 27.7
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.0e-21 109.4 496 29.2
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.0e-20 105.1 658 26.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.4e-18 98.2 214 33.6
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-18 97.8 515 27.8
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.0e-18 96.7 424 28.1
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 3.5e-17 94.4 613 26.4
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 3.9e-16 90.9 190 33.7
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 3.9e-16 90.9 190 33.7
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.5e-15 89.0 583 26.6
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 7.3e-15 86.7 138 37.7
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.5e-15 86.3 587 26.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.4e-12 77.8 218 33.9
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 9.8e-12 76.3 457 26.5
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.9e-11 73.9 640 25.5
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.1e-10 70.1 177 35.0
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-09 69.3 159 33.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-08 65.9 91 46.2
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 1.3e-08 65.9 210 30.5
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.0e-08 64.7 55 56.4
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.9e-07 62.0 213 30.0
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 2.5e-07 61.6 52 55.8
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 5.6e-07 60.5 309 27.2
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 7.3e-07 60.1 214 29.9
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 2.1e-06 58.5 121 36.4
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 4.7e-06 57.4 45 55.6
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 6.2e-06 57.0 51 51.0


User provided reference genes

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