Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346861 Helianthus annuus HOM05D004622 ORTHO05D005431 2.8e-79 298.5 145 100.0
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.1e-26 122.9 124 50.8
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 6.5e-20 101.3 79 54.4
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 6.0e-18 94.7 160 38.1
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 1.6e-15 86.7 191 33.5
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 1.9e-11 73.2 133 37.6
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 3.2e-11 72.4 132 39.4
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 4.2e-11 72.0 129 37.2
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 4.2e-11 72.0 195 31.8
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 5.5e-11 71.6 219 29.7
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 5.5e-11 71.6 91 48.4
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 5.5e-11 71.6 86 46.5
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 7.2e-11 71.2 103 41.7
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 7.2e-11 71.2 149 35.6
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 7.2e-11 71.2 61 59.0
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 9.4e-11 70.9 67 53.7
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 9.4e-11 70.9 194 27.8
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 1.2e-10 70.5 134 37.3
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 1.2e-10 70.5 195 33.3
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.2e-10 70.5 63 55.6
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 1.6e-10 70.1 129 39.5
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 2.1e-10 69.7 132 37.9
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 2.7e-10 69.3 81 48.1
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 2.7e-10 69.3 149 37.6
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 3.6e-10 68.9 125 36.8
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 3.6e-10 68.9 61 55.7
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 3.6e-10 68.9 63 52.4
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 4.6e-10 68.6 107 39.3
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 4.6e-10 68.6 94 46.8
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 6.1e-10 68.2 68 51.5
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 6.1e-10 68.2 114 35.1
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 6.1e-10 68.2 171 32.7
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 7.9e-10 67.8 68 54.4
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 7.9e-10 67.8 124 33.9
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 1.0e-09 67.4 96 44.8
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.0e-09 67.4 125 36.8
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.4e-09 67.0 149 33.6
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 1.8e-09 66.6 128 35.2
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.8e-09 66.6 124 33.9
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 2.3e-09 66.2 133 35.3
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.3e-09 66.2 99 40.4
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 3.0e-09 65.9 124 33.9
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 3.0e-09 65.9 67 49.3
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 3.0e-09 65.9 68 51.5
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 3.0e-09 65.9 68 51.5
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 3.0e-09 65.9 68 51.5
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 3.0e-09 65.9 68 51.5
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 3.0e-09 65.9 68 51.5
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 3.9e-09 65.5 71 49.3
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 3.9e-09 65.5 124 37.1
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 5.1e-09 65.1 68 51.5
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 5.1e-09 65.1 63 52.4
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 5.1e-09 65.1 104 39.4
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 6.7e-09 64.7 99 41.4
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 6.7e-09 64.7 67 50.7
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 6.7e-09 64.7 68 51.5
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 8.8e-09 64.3 124 35.5
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 8.8e-09 64.3 128 34.4
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 8.8e-09 64.3 88 37.5
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.1e-08 63.9 58 50.0
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 1.1e-08 63.9 58 50.0
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 1.1e-08 63.9 58 50.0
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.1e-08 63.9 69 46.4
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 1.5e-08 63.5 69 47.8
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 1.5e-08 63.5 95 41.1
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.0e-08 63.2 67 50.7
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 2.0e-08 63.2 115 35.7
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 2.5e-08 62.8 221 27.1
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 2.5e-08 62.8 61 52.5
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 2.5e-08 62.8 60 53.3
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 2.5e-08 62.8 61 54.1
SalBow3G2592 Salvia bowleyana HOM05D004622 ORTHO05D005431 2.5e-08 62.8 164 31.7
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 3.3e-08 62.4 70 48.6
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 3.3e-08 62.4 67 46.3
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 3.3e-08 62.4 66 47.0
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 3.3e-08 62.4 71 45.1
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 3.3e-08 62.4 95 37.9
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 3.3e-08 62.4 101 36.6
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 4.3e-08 62.0 120 34.2
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 4.3e-08 62.0 77 41.6
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 5.7e-08 61.6 65 50.8
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.7e-08 61.6 104 39.4
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 5.7e-08 61.6 85 40.0
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 5.7e-08 61.6 59 50.8
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.4e-08 61.2 68 48.5
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 7.4e-08 61.2 68 48.5
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 7.4e-08 61.2 68 48.5
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 9.7e-08 60.8 68 50.0
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 9.7e-08 60.8 71 43.7
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 9.7e-08 60.8 107 40.2
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 9.7e-08 60.8 58 51.7
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 9.7e-08 60.8 91 35.2
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 9.7e-08 60.8 128 34.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.3e-07 60.5 105 40.0
ECA233G1222 Erigeron canadensis HOM05D000892 ORTHO05D000750 1.3e-07 60.5 61 49.2
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 1.3e-07 60.5 115 34.8
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.3e-07 60.5 113 38.1
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 1.7e-07 60.1 54 51.9
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.7e-07 60.1 133 34.6
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 1.7e-07 60.1 67 47.8
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 1.7e-07 60.1 87 39.1
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 2.2e-07 59.7 128 35.2
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.8e-07 59.3 80 46.2
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.8e-07 59.3 101 39.6
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 3.7e-07 58.9 131 35.1
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 3.7e-07 58.9 164 30.5
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 3.7e-07 58.9 98 35.7
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 4.8e-07 58.5 56 51.8
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 6.3e-07 58.2 63 47.6
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 6.3e-07 58.2 57 47.4
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 1.4e-06 57.0 220 28.6
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 1.4e-06 57.0 68 47.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.1e-06 55.8 79 40.5
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.1e-06 55.8 79 40.5
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.1e-06 55.8 79 40.5
TPR.G17219 Trifolium pratense HOM05D004622 ORTHO05D005431 3.1e-06 55.8 72 44.4
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 4.1e-06 55.5 67 44.8
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 9.1e-06 54.3 77 45.5


User provided reference genes

Program Settings