Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346521 Helianthus annuus HOM05D000001 ORTHO05D226184 7.3e-52 206.8 97 100.0
HanXRQChr12g0380171 Helianthus annuus HOM05D000001 ORTHO05D000003 6.6e-45 183.7 94 92.6
Lsat_1_v5_gn_1_41920 Lactuca sativa HOM05D000001 ORTHO05D000003 3.2e-23 111.7 94 62.8
Manes.02G061600 Manihot esculenta HOM05D000001 ORTHO05D000003 6.0e-14 80.9 66 60.6
Lj6C58T5 Lonicera japonica HOM05D000001 ORTHO05D000003 1.8e-13 79.3 96 50.0
RcHm_v2.0_Chr2g0164271 Rosa chinensis HOM05D000001 ORTHO05D000003 6.7e-13 77.4 86 47.7
Sed0021977 Sechium edule HOM05D000001 ORTHO05D000003 6.7e-13 77.4 76 51.3
EL10Ac2g04406 Beta vulgaris HOM05D000001 ORTHO05D000003 1.1e-12 76.6 52 65.4
Gohir.A12G057000 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.5e-12 75.5 71 52.1
Gohir.D12G056500 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.5e-12 75.5 71 52.1
Gorai.008G059500 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.5e-12 75.5 71 52.1
Sc10g0000480 Simmondsia chinensis HOM05D000001 ORTHO05D000003 2.5e-12 75.5 65 55.4
MD09G1077900 Malus domestica HOM05D000001 ORTHO05D016558 4.3e-12 74.7 88 47.7
Nn4g23581 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.3e-12 74.7 49 69.4
Oeu032845.1 Olea europaea HOM05D000001 ORTHO05D000003 4.3e-12 74.7 50 68.0
Duzib211G0053 Durio zibethinus HOM05D000001 ORTHO05D000003 5.7e-12 74.3 45 68.9
TAR371G0630 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.7e-12 74.3 53 64.2
PGR004G1382 Punica granatum HOM05D000001 ORTHO05D000003 7.4e-12 73.9 51 60.8
Thecc.04G110900 Theobroma cacao HOM05D000001 ORTHO05D000003 7.4e-12 73.9 71 53.5
MD17G1068000 Malus domestica HOM05D000001 ORTHO05D000003 9.7e-12 73.6 79 49.4
Hma1.2p1_0588F.1_g184600 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.3e-11 73.2 45 66.7
Lalb_Chr17g0336731 Lupinus albus HOM05D000001 ORTHO05D000003 1.3e-11 73.2 47 70.2
Nitab4.5_0004982g0070 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.3e-11 73.2 45 73.3
Rhsim10G0061100 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.2e-11 72.4 45 68.9
SGA_v2.0_scaffold4G02350 Striga asiatica HOM05D000001 ORTHO05D000003 2.2e-11 72.4 51 58.8
Cfa007719 Carpinus fangiana HOM05D000001 ORTHO05D000003 4.8e-11 71.2 44 65.9
Potri.004G111300 Populus trichocarpa HOM05D000001 ORTHO05D000003 4.8e-11 71.2 76 50.0
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 4.8e-11 71.2 44 70.5
TWI34G0230 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 6.3e-11 70.9 44 68.2
Atru.chr8.684 Acer truncatum HOM05D000001 ORTHO05D000003 8.2e-11 70.5 81 44.4
MSTRG.2963 Avicennia marina HOM05D000001 ORTHO05D000003 8.2e-11 70.5 50 62.0
CSS0001629 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.2e-11 70.5 65 50.8
CSS0020701 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.2e-11 70.5 65 50.8
CSS0031260 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.2e-11 70.5 65 50.8
CANSAT64G0996 Cannabis sativa HOM05D000001 ORTHO05D000003 8.2e-11 70.5 77 50.6
Migut.H00572 Erythranthe guttata HOM05D000001 ORTHO05D000003 8.2e-11 70.5 68 51.5
Solyc06g082880.2 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.1e-10 70.1 45 68.9
Sopen06g034240 Solanum pennellii HOM05D000001 ORTHO05D000003 1.1e-10 70.1 45 68.9
TPR.G32546 Trifolium pratense HOM05D000001 ORTHO05D000003 1.1e-10 70.1 44 70.5
TPR.G38179 Trifolium pratense HOM05D000001 ORTHO05D000003 1.1e-10 70.1 44 70.5
GSVIVG01036511001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-10 70.1 57 59.6
Cpa.g.c34851.2 Carica papaya HOM05D000001 ORTHO05D000003 1.4e-10 69.7 45 64.4
QL05p087376 Quercus lobata HOM05D000001 ORTHO05D000003 1.4e-10 69.7 44 65.9
ClCG02G005700 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.8e-10 69.3 45 64.4
Haze_14355 Corylus avellana HOM05D000001 ORTHO05D000003 1.8e-10 69.3 44 63.6
FvH4_6g28230 Fragaria vesca HOM05D000001 ORTHO05D000003 2.4e-10 68.9 63 50.8
FAN14G4925 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.4e-10 68.9 63 50.8
Phvul.008G023900 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.1e-10 68.2 52 61.5
CiPaw.03G080800 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.3e-10 67.8 44 63.6
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 5.3e-10 67.8 47 57.4
FAN05G3610 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-10 67.4 63 52.4
Psat3g194200 Pisum sativum HOM05D000001 ORTHO05D000003 6.9e-10 67.4 44 68.2
TPR.G3273 Trifolium pratense HOM05D000001 ORTHO05D000003 9.0e-10 67.0 41 70.7
VMungo1383G0459 Vigna mungo HOM05D000001 ORTHO05D000003 9.0e-10 67.0 44 68.2
Cc07_g04680 Coffea canephora HOM05D000001 ORTHO05D000003 1.2e-09 66.6 44 61.4
PGSC0003DMG400044092 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.2e-09 66.6 45 62.2
arahy.Tifrunner.gnm1.ann1.9TZZ10 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-09 65.1 44 63.6
arahy.Tifrunner.gnm1.ann1.IJR7LR Arachis hypogaea HOM05D000001 ORTHO05D000003 3.4e-09 65.1 44 63.6
Medtr7g017700 Medicago truncatula HOM05D000001 ORTHO05D000003 3.4e-09 65.1 44 61.4
Medtr7g417770 Medicago truncatula HOM05D000001 ORTHO05D000003 3.4e-09 65.1 44 61.4
Glyma.08G254300 Glycine max HOM05D000001 ORTHO05D000003 5.9e-09 64.3 44 65.9
MELO3C018431.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.0e-08 63.5 39 66.7
Glyma.18G277000 Glycine max HOM05D000001 ORTHO05D000003 1.0e-08 63.5 44 63.6
Lj1g0019122 Lotus japonicus HOM05D000001 ORTHO05D000003 1.3e-08 63.2 44 63.6
THA.LOC104827144 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.9e-08 62.0 52 51.9
CAN.G874.45 Capsicum annuum HOM05D000001 ORTHO05D000003 3.8e-08 61.6 43 65.1
Ciclev10011041m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.8e-08 61.6 77 44.2
BNapus_Darmor_BZH_scaffold_208p00130 Brassica napus HOM05D000001 ORTHO05D000003 5.0e-08 61.2 76 40.8
BraSC141t45621Z Brassica rapa HOM05D000001 ORTHO05D000003 5.0e-08 61.2 76 40.8
BcaC09g47693 Brassica carinata HOM05D000001 ORTHO05D000003 6.5e-08 60.8 52 50.0
BolC1t05912H Brassica oleracea HOM05D000001 ORTHO05D000003 6.5e-08 60.8 52 51.9
ATR0691G008 Amborella trichopoda HOM05D000001 ORTHO05D000003 8.5e-08 60.5 50 52.0
AL3G11620 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 8.5e-08 60.5 42 59.5
PSO541G4059 Papaver somniferum HOM05D000001 ORTHO05D000003 1.1e-07 60.1 44 65.9
Aa31LG5G12870 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.9e-07 59.3 42 59.5
AT3G02330 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 1.9e-07 59.3 42 59.5
CARHR076310 Cardamine hirsuta HOM05D000001 ORTHO05D000003 2.5e-07 58.9 67 43.3
Carub.0003s0144 Capsella rubella HOM05D000001 ORTHO05D000003 3.2e-07 58.5 42 59.5
Thhalv10001098m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 3.2e-07 58.5 62 48.4
Sp3g01390 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.5e-07 57.8 52 48.1
Eucgr.I02086 Eucalyptus grandis HOM05D000001 ORTHO05D000003 2.1e-06 55.8 35 68.6
Zm00001eb405990 Zea mays HOM05D000001 ORTHO05D000003 2.1e-06 55.8 45 55.6
Os10g0558600 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.6e-06 54.7 45 53.3
SHI25816 Sapria himalayana HOM05D000001 ORTHO05D000003 4.6e-06 54.7 45 51.1


User provided reference genes

Program Settings