Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 0.0e+00 1095.9 570 100.0
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 2.0e-258 895.6 571 84.1
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 4.1e-219 765.0 566 71.4
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.6e-215 753.1 567 70.9
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 8.0e-215 750.7 567 70.7
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 2.2e-212 742.7 569 69.6
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 3.8e-209 731.9 565 68.7
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 8.5e-209 730.7 572 68.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.6e-207 725.3 571 68.1
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 8.3e-204 714.1 569 68.9
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.8e-203 713.0 570 66.0
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 7.7e-202 707.6 576 64.4
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 7.7e-202 707.6 566 66.4
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.3e-201 706.8 568 65.1
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.7e-201 706.4 570 66.3
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 6.6e-201 704.5 569 66.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 8.6e-201 704.1 570 65.6
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.9e-200 703.0 567 66.1
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.6e-200 701.4 567 65.6
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 6.1e-199 698.0 566 66.3
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.0e-198 697.2 570 65.6
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.3e-198 696.0 604 64.9
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.2e-197 693.7 570 65.6
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 2.6e-197 692.6 568 65.7
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 7.5e-197 691.0 570 63.5
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 7.5e-197 691.0 568 69.5
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 9.8e-197 690.6 568 64.6
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.8e-197 690.6 580 64.1
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 6.4e-196 688.0 570 64.2
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.4e-195 686.0 575 64.5
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 2.4e-195 686.0 566 65.5
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.2e-195 685.6 569 63.6
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.4e-195 684.9 575 64.3
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 7.0e-195 684.5 566 65.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.2e-194 683.7 566 65.0
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.7e-194 682.6 575 64.3
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.7e-194 682.6 570 64.4
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 5.9e-194 681.4 503 71.2
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.3e-193 680.2 569 63.4
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-193 679.9 575 64.3
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 3.0e-193 679.1 578 62.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 8.6e-193 677.6 569 64.7
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.5e-192 676.8 566 64.0
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.9e-192 676.4 569 63.6
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.5e-192 676.0 584 62.3
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 5.6e-192 674.9 566 64.8
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 1.6e-191 673.3 572 61.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.0e-190 668.7 550 66.4
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 5.2e-190 668.3 564 64.2
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 2.0e-189 666.4 566 63.4
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 3.4e-189 665.6 566 63.4
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 4.4e-189 665.2 568 62.5
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 8.3e-188 661.0 563 63.8
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.9e-187 659.8 583 61.7
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.6e-186 656.8 569 62.0
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.6e-186 656.8 568 62.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 4.6e-186 655.2 566 63.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 7.8e-186 654.4 585 61.5
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 1.0e-185 654.1 566 61.1
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 4.3e-184 648.7 568 61.8
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 5.6e-184 648.3 571 61.6
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.6e-183 646.7 498 66.9
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.6e-183 645.6 568 61.4
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 4.7e-183 645.2 568 61.3
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 3.1e-182 642.5 476 71.4
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 6.8e-182 641.3 523 66.5
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 1.5e-181 640.2 571 60.4
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 3.4e-181 639.0 569 61.7
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 9.8e-181 637.5 609 58.1
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 3.7e-180 635.6 571 59.9
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 6.4e-180 634.8 571 60.4
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 6.4e-180 634.8 567 61.7
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.9e-179 633.3 564 62.9
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.2e-178 630.6 572 59.4
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 1.0e-177 627.5 572 59.6
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.3e-177 627.1 570 61.4
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 2.3e-177 626.3 571 58.7
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.9e-177 625.5 575 61.2
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.1e-177 625.2 572 59.4
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 5.1e-177 625.2 571 58.5
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 6.6e-177 624.8 564 59.0
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 8.6e-177 624.4 564 59.0
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 8.6e-177 624.4 564 59.0
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.1e-176 624.0 569 58.7
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 6.2e-175 618.2 597 57.6
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 2.6e-173 612.8 601 58.9
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 8.4e-172 607.8 587 57.1
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 5.4e-171 605.1 464 68.5
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 7.1e-171 604.7 506 66.2
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 3.5e-170 602.4 482 66.4
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-167 594.0 588 56.8
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.6e-167 593.6 574 57.0
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 2.1e-167 593.2 581 57.1
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.6e-167 592.4 567 60.0
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.8e-166 590.1 647 54.4
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 4.0e-166 589.0 575 56.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.7e-164 583.6 502 62.0
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 2.7e-154 549.7 513 58.3
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.0e-153 547.7 566 58.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.1e-150 537.7 537 54.9
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 6.4e-148 528.5 485 59.4
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.3e-145 520.8 572 51.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.2e-143 511.9 553 53.2
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.1e-142 511.1 591 51.9
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.2e-141 507.7 479 58.7
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.9e-139 500.4 512 52.5
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 7.1e-139 498.4 349 72.5
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 3.9e-137 492.7 349 73.4
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.5e-128 463.4 332 73.8
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.3e-128 462.6 403 63.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.9e-123 447.2 528 52.3
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 6.7e-121 438.7 487 51.1
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.3e-111 407.9 243 86.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.7e-111 406.4 369 59.6
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.0e-108 396.0 242 81.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.0e-108 396.0 242 81.4
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.5e-101 372.9 234 79.5
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 1.5e-96 357.8 415 51.6
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.0e-96 357.5 277 67.5
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 1.4e-94 351.3 432 49.3
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 7.0e-94 349.0 414 51.2
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.8e-92 343.2 389 49.9
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 5.0e-92 342.8 192 89.6
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.4e-88 330.1 332 55.7
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 8.3e-87 325.5 397 48.1
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 4.1e-86 323.2 306 56.5
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 1.7e-84 317.8 572 38.6
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.7e-79 301.2 379 49.3
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.2e-77 295.0 159 89.3
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 2.3e-73 280.8 579 34.2
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 1.9e-62 244.6 143 84.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 7.1e-62 242.7 464 37.9
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.1e-60 236.5 143 85.3
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.5e-59 232.3 143 83.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 1.8e-57 228.0 239 57.3
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 8.9e-57 225.7 134 86.6
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-54 218.8 128 85.9
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.4e-49 201.1 232 51.3
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-49 199.1 533 31.3
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 4.0e-41 173.7 501 29.9
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.1e-34 149.4 88 84.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.4e-31 139.8 92 76.1
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 7.4e-27 126.3 174 42.0
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.1e-25 120.9 167 44.9
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 1.2e-24 119.0 267 34.5
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.9e-23 114.4 211 37.4
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.5e-23 113.2 123 52.8
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 1.9e-22 111.7 132 50.0
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-18 97.8 254 31.1
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.4e-17 95.5 257 29.6
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 7.6e-16 89.7 45 93.3
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.0e-15 87.0 52 80.8
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 4.1e-09 67.4 85 45.9


User provided reference genes

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