Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 1.6e-22 108.6 57 100.0
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 2.3e-21 104.8 57 96.5
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 4.3e-20 100.5 54 94.4
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 7.6e-17 89.7 48 91.7
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 5.0e-16 87.0 46 91.3
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 8.5e-16 86.3 47 87.2
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 1.1e-15 85.9 48 81.2
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 2.5e-15 84.7 48 83.3
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 3.2e-15 84.3 46 84.8
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 3.2e-15 84.3 46 84.8
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 3.2e-15 84.3 48 81.2
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 4.2e-15 84.0 48 81.2
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 4.2e-15 84.0 46 84.8
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 4.2e-15 84.0 46 84.8
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 4.2e-15 84.0 49 77.6
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 5.5e-15 83.6 45 84.4
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 5.5e-15 83.6 48 79.2
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 5.5e-15 83.6 46 82.6
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 5.5e-15 83.6 45 84.4
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 7.2e-15 83.2 45 82.2
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 7.2e-15 83.2 45 82.2
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 7.2e-15 83.2 45 84.4
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 9.3e-15 82.8 46 82.6
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 9.3e-15 82.8 46 82.6
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 9.3e-15 82.8 45 82.2
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 1.2e-14 82.4 45 84.4
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 1.2e-14 82.4 45 82.2
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.6e-14 82.0 47 78.7
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 1.6e-14 82.0 45 82.2
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 1.6e-14 82.0 45 82.2
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 2.1e-14 81.6 48 81.2
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 2.1e-14 81.6 48 81.2
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 2.1e-14 81.6 48 81.2
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 2.1e-14 81.6 48 81.2
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 2.1e-14 81.6 45 82.2
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 2.1e-14 81.6 45 82.2
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 2.7e-14 81.3 46 84.8
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 2.7e-14 81.3 48 79.2
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 3.6e-14 80.9 48 79.2
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 3.6e-14 80.9 48 79.2
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.6e-14 80.9 47 78.7
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.6e-14 80.9 47 78.7
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 6.1e-14 80.1 47 78.7
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 6.1e-14 80.1 47 78.7
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 6.1e-14 80.1 49 81.6
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 1.0e-13 79.3 48 77.1
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 1.0e-13 79.3 45 84.4
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 1.0e-13 79.3 45 84.4
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 1.0e-13 79.3 45 84.4
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.0e-13 79.3 45 80.0
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 1.0e-13 79.3 45 82.2
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 1.0e-13 79.3 56 67.9
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 1.4e-13 79.0 47 78.7
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 2.3e-13 78.2 55 70.9
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 2.3e-13 78.2 46 80.4
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 2.3e-13 78.2 50 72.0
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 76.6
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 76.6
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 76.6
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 80.9
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 76.6
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 3.0e-13 77.8 47 80.9
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 3.9e-13 77.4 53 73.6
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 3.9e-13 77.4 46 76.1
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 5.1e-13 77.0 46 76.1
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 5.1e-13 77.0 45 77.8
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 6.7e-13 76.6 48 75.0
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 6.7e-13 76.6 45 73.3
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 6.7e-13 76.6 47 74.5
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 8.8e-13 76.3 45 77.8
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 1.9e-12 75.1 48 75.0
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.7e-12 73.6 46 76.1
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.7e-12 73.6 46 76.1
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 7.4e-12 73.2 50 70.0
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 1.7e-11 72.0 48 75.0
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 2.2e-11 71.6 46 73.9
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 2.2e-11 71.6 43 74.4
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 3.7e-11 70.9 45 68.9
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 8.2e-11 69.7 43 69.8
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 1.4e-10 68.9 46 73.9
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 1.8e-10 68.6 49 67.3
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 1.8e-10 68.6 54 61.1
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 6.9e-10 66.6 37 86.5
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 6.9e-10 66.6 49 63.3
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 2.0e-09 65.1 44 68.2
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 5.0e-08 60.5 57 57.9
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.6e-06 55.5 29 86.2
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.1e-06 55.1 32 75.0
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 7.9e-06 53.1 29 82.8


User provided reference genes

Program Settings