Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 7.9e-87 324.3 244 100.0
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 4.5e-74 282.0 244 75.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.5e-42 175.6 248 54.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.8e-33 146.0 257 51.0
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.9e-20 103.2 186 42.5
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.7e-20 102.8 244 40.2
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.3e-20 101.7 245 38.4
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.1e-19 101.3 185 42.7
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.2e-18 97.8 243 38.3
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.2e-18 97.8 245 42.9
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.7e-18 96.7 190 42.6
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 2.7e-18 96.7 185 39.5
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.6e-18 95.9 239 40.6
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.6e-18 95.9 239 38.9
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 6.0e-18 95.5 188 39.9
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 6.0e-18 95.5 244 36.9
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 7.8e-18 95.1 246 40.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.0e-17 94.7 248 41.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.3e-17 94.4 183 39.3
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.3e-17 93.6 243 35.8
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.0e-17 93.2 187 39.0
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.9e-17 92.8 164 44.5
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 5.1e-17 92.4 246 39.8
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 5.1e-17 92.4 194 40.7
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 5.1e-17 92.4 241 37.8
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 5.1e-17 92.4 188 38.3
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 6.6e-17 92.0 180 41.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 6.6e-17 92.0 259 41.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 8.6e-17 91.7 184 39.7
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.5e-16 90.9 187 39.6
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.9e-16 90.5 244 41.8
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.5e-16 90.1 192 39.1
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.3e-16 89.4 187 40.6
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 4.3e-16 89.4 258 40.3
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.3e-16 89.4 245 43.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 5.6e-16 89.0 255 40.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.6e-16 89.0 192 38.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 5.6e-16 89.0 186 42.5
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 7.3e-16 88.6 153 41.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.5e-16 88.2 187 40.6
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 9.5e-16 88.2 241 38.2
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 9.5e-16 88.2 189 38.6
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-15 87.8 240 38.8
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.6e-15 87.4 188 39.4
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.6e-15 87.4 183 41.0
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.8e-15 86.7 183 39.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 2.8e-15 86.7 248 39.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.8e-15 86.7 187 40.1
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.8e-15 86.7 182 38.5
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.8e-15 86.7 242 38.0
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.8e-15 86.7 246 41.1
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 2.8e-15 86.7 250 36.8
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 2.8e-15 86.7 184 38.6
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 3.6e-15 86.3 244 39.8
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 4.7e-15 85.9 188 38.3
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 4.7e-15 85.9 187 40.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 6.2e-15 85.5 258 39.5
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 8.1e-15 85.1 184 40.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 8.1e-15 85.1 184 38.6
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.4e-14 84.3 254 37.4
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-14 84.3 241 35.3
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-14 84.3 186 37.1
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.4e-14 84.3 167 40.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.4e-14 84.3 186 37.6
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.8e-14 84.0 243 39.1
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.3e-14 83.6 248 35.1
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 4.0e-14 82.8 186 37.6
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 4.0e-14 82.8 192 39.6
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 5.2e-14 82.4 188 38.3
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 6.8e-14 82.0 238 32.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 6.8e-14 82.0 187 39.0
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 6.8e-14 82.0 173 39.9
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 6.8e-14 82.0 185 35.7
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 6.8e-14 82.0 244 38.5
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 8.9e-14 81.6 191 38.7
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.0e-13 80.5 178 39.9
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.6e-13 80.1 186 37.6
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.4e-13 79.7 186 38.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 4.4e-13 79.3 269 37.5
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.4e-13 79.3 188 37.8
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 5.8e-13 79.0 238 34.0
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 5.8e-13 79.0 247 37.7
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 5.8e-13 79.0 185 36.8
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 5.8e-13 79.0 246 37.8
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 9.9e-13 78.2 240 40.0
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 9.9e-13 78.2 225 40.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.3e-12 77.8 185 35.1
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.3e-12 77.8 185 36.2
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-12 77.4 124 46.0
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.2e-12 77.0 246 34.1
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.9e-12 76.6 184 34.8
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.9e-12 76.6 186 36.0
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.7e-12 76.3 240 35.8
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.7e-12 76.3 249 36.5
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 4.9e-12 75.9 124 45.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 4.9e-12 75.9 137 43.1
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.9e-12 75.9 187 36.9
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.9e-12 75.9 185 35.7
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 6.4e-12 75.5 122 45.9
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 6.4e-12 75.5 122 45.9
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 6.4e-12 75.5 122 45.9
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 6.4e-12 75.5 239 31.4
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 8.3e-12 75.1 139 43.9
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.1e-11 74.7 133 42.1
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.1e-11 74.7 120 42.5
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 1.4e-11 74.3 124 43.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.4e-11 74.3 186 37.6
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.4e-11 74.3 187 34.2
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.4e-11 74.3 174 37.9
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 2.4e-11 73.6 139 42.4
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 2.4e-11 73.6 139 42.4
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.4e-11 73.6 186 37.1
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 3.2e-11 73.2 241 32.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 4.1e-11 72.8 124 43.5
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 7.1e-11 72.0 188 36.7
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 7.1e-11 72.0 188 36.7
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 7.1e-11 72.0 188 36.7
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 9.2e-11 71.6 188 36.7
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 9.2e-11 71.6 115 41.7
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.6e-10 70.9 188 36.7
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.1e-10 70.5 250 34.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.7e-10 70.1 246 34.1
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.7e-10 70.1 193 42.5
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.5e-10 69.7 187 36.9
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 4.6e-10 69.3 122 43.4
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.6e-09 65.5 121 39.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 8.6e-09 65.1 122 37.7
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 8.6e-09 65.1 178 32.0
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.9e-08 63.9 112 43.8
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 7.3e-08 62.0 175 32.6
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 9.5e-08 61.6 173 41.6
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 9.5e-08 61.6 133 38.3
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 3.6e-07 59.7 184 35.9
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.7e-07 59.3 192 34.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.7e-07 59.3 192 34.4
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.1e-06 56.6 242 35.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 8.9e-06 55.1 140 32.9


User provided reference genes

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