Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 9.5e-26 119.4 60 100.0
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-23 112.1 59 96.6
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 3.7e-22 107.5 59 91.5
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 4.9e-22 107.1 59 91.5
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 8.3e-22 106.3 59 91.5
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 8.3e-22 106.3 59 91.5
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 8.3e-22 106.3 59 91.5
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-21 105.9 59 89.8
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.9e-21 105.1 59 89.8
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 2.4e-21 104.8 59 89.8
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 2.4e-21 104.8 59 89.8
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.4e-21 104.8 59 89.8
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.4e-21 104.8 59 89.8
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 2.4e-21 104.8 59 89.8
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-21 104.4 59 89.8
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 4.1e-21 104.0 59 88.1
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 4.1e-21 104.0 59 88.1
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 7.0e-21 103.2 59 84.7
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 7.0e-21 103.2 59 88.1
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 9.2e-21 102.8 59 86.4
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.2e-20 102.4 59 86.4
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 3.5e-20 100.9 59 84.7
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.6e-20 100.5 59 86.4
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 1.3e-19 99.0 59 83.1
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-19 99.0 59 84.7
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 3.3e-18 94.4 59 81.4
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 1.2e-17 92.4 50 92.0
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.2e-17 92.4 59 81.4
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 1.6e-17 92.0 55 83.6
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-17 92.0 59 78.0
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 8.1e-17 89.7 56 80.4
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 8.1e-17 89.7 59 78.0
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 8.1e-17 89.7 57 80.7
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 1.1e-16 89.4 60 81.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 4.0e-16 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 4.0e-16 87.4 46 93.5
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-15 85.9 59 74.6
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.0e-15 85.1 49 83.7
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 5.8e-15 83.6 50 82.0
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-12 75.9 51 72.5
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 3.5e-12 74.3 41 87.8
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.0e-12 73.6 46 82.6
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 1.0e-11 72.8 51 76.5
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 1.3e-11 72.4 40 87.5
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.3e-11 71.6 40 87.5
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 6.6e-11 70.1 45 75.6
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 6.6e-11 70.1 80 52.5
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 6.6e-11 70.1 80 52.5
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.6e-11 69.7 46 78.3
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 7.3e-10 66.6 42 76.2
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 2.1e-09 65.1 44 75.0
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 2.1e-09 65.1 44 75.0
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 3.6e-09 64.3 37 83.8
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 5.2e-08 60.5 39 76.9
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.9e-06 54.7 34 76.5


User provided reference genes

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