Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 3.3e-127 458.4 230 100.0
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 9.2e-53 211.1 243 52.7
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 1.2e-49 200.7 244 53.7
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 3.7e-38 162.5 243 44.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 2.3e-35 153.3 242 42.6
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.3e-34 149.4 221 46.2
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 3.6e-33 146.0 224 46.0
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.4e-32 144.1 241 41.9
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 2.2e-30 136.7 246 39.8
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 1.9e-29 133.7 247 39.7
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 9.2e-29 131.3 191 45.0
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.2e-28 131.0 207 43.5
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.2e-28 131.0 207 43.5
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 2.7e-28 129.8 232 39.2
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 4.6e-28 129.0 193 43.5
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.3e-27 127.5 209 41.6
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.7e-27 127.1 196 45.4
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 3.0e-27 126.3 190 42.6
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.9e-27 125.9 200 45.5
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.1e-27 125.6 198 38.9
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 8.7e-27 124.8 209 41.1
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 8.7e-27 124.8 189 43.4
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.1e-26 124.4 194 42.8
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.5e-26 124.0 198 40.4
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.3e-26 122.9 191 40.3
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 3.3e-26 122.9 237 38.4
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 5.6e-26 122.1 238 40.3
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 1.6e-25 120.6 204 42.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.8e-25 119.8 199 43.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.8e-25 119.0 196 43.4
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 6.2e-25 118.6 194 43.3
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 8.1e-25 118.2 190 42.1
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 1.4e-24 117.5 209 38.8
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 2.4e-24 116.7 191 41.4
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.4e-24 116.7 202 40.6
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.4e-24 116.7 202 40.6
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 5.3e-24 115.5 231 37.2
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 5.3e-24 115.5 192 39.1
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 5.3e-24 115.5 194 43.3
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.9e-24 115.2 230 36.1
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.9e-24 115.2 231 36.8
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.2e-23 114.4 217 36.9
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 4.4e-23 112.5 198 38.4
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 4.4e-23 112.5 198 39.9
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 4.4e-23 112.5 207 39.1
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 5.8e-23 112.1 202 39.6
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.7e-22 110.5 192 43.2
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.2e-22 110.2 191 41.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 2.9e-22 109.8 198 40.4
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.9e-22 109.8 244 36.1
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 4.9e-22 109.0 192 38.5
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 4.9e-22 109.0 196 38.8
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 6.4e-22 108.6 242 33.9
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.4e-21 107.5 210 37.6
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 2.4e-21 106.7 215 38.1
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 3.2e-21 106.3 224 34.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 3.2e-21 106.3 231 36.4
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 4.2e-21 105.9 212 38.7
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 4.2e-21 105.9 201 38.8
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.2e-21 105.9 147 45.6
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 7.1e-21 105.1 195 39.0
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.6e-20 104.0 214 35.5
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 6.0e-20 102.1 238 34.5
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 1.3e-19 100.9 167 41.3
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.7e-19 100.5 213 34.3
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 5.1e-19 99.0 190 41.1
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.1e-18 97.8 174 42.0
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 1.9e-18 97.1 190 36.8
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 4.3e-18 95.9 147 42.9
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.1e-17 93.6 214 33.6
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.1e-16 91.3 245 34.7
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.8e-16 90.5 199 35.7
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.3e-16 89.0 220 34.5
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.5e-15 87.4 162 35.2
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.0e-15 87.0 216 32.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.0e-15 87.0 219 34.2
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 2.6e-15 86.7 205 33.2
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.6e-15 86.7 180 34.4
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 3.4e-15 86.3 148 37.2
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 9.9e-15 84.7 205 31.7
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.4e-13 80.9 224 34.4
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.2e-13 79.7 157 38.2
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 5.4e-13 79.0 187 34.8
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 5.4e-13 79.0 194 36.1
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.3e-13 78.2 214 33.2
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 9.3e-13 78.2 197 35.0
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.2e-12 77.8 224 32.6
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 2.7e-12 76.6 166 40.4
ECA247G1060 Erigeron canadensis HOM05D051946 ORTHO05D008965 2.7e-12 76.6 185 33.0
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 2.7e-12 76.6 213 31.5
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 3.0e-11 73.2 218 27.5
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.9e-11 72.8 147 38.8
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 7.4e-10 68.6 187 33.7
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.8e-09 65.9 128 36.7
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 6.2e-09 65.5 124 37.1
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 8.1e-09 65.1 126 37.3
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 4.0e-08 62.8 144 32.6
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.5e-07 60.8 164 32.9
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 1.5e-07 60.8 175 33.1
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 7.6e-07 58.5 87 47.1
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 7.6e-07 58.5 142 34.5
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 4.9e-06 55.8 245 26.5
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 6.4e-06 55.5 132 34.8
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 6.4e-06 55.5 63 42.9
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 8.4e-06 55.1 187 29.4
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 8.4e-06 55.1 145 31.7


User provided reference genes

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