Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 8.5e-42 173.3 92 100.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.3e-31 138.7 92 78.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 4.5e-19 97.8 68 79.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.1e-17 93.2 75 64.0
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.5e-17 92.8 75 64.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.5e-17 90.1 91 57.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.6e-16 89.4 69 71.0
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.1e-16 89.0 81 61.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.1e-16 89.0 68 70.6
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.8e-16 88.6 73 61.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.6e-16 88.2 74 64.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.7e-16 87.8 92 55.4
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 6.1e-16 87.4 74 63.5
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 8.0e-16 87.0 75 62.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 8.0e-16 87.0 65 69.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.0e-15 86.7 73 67.1
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.4e-15 86.3 73 67.1
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.4e-15 86.3 83 59.0
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.4e-15 86.3 84 58.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.4e-15 86.3 73 65.8
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.8e-15 85.9 73 65.8
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-15 85.9 73 63.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.3e-15 85.5 84 58.3
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.3e-15 85.5 83 59.0
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.3e-15 85.5 86 58.1
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.0e-15 85.1 71 66.2
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 4.0e-15 84.7 84 56.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.2e-15 84.3 83 57.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 6.8e-15 84.0 80 62.5
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 8.8e-15 83.6 73 63.0
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 8.8e-15 83.6 72 62.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 8.8e-15 83.6 70 65.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.2e-14 83.2 86 53.5
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 68 66.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.6e-14 82.0 81 58.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.6e-14 82.0 72 63.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.6e-14 82.0 74 60.8
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 3.4e-14 81.6 67 65.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 3.4e-14 81.6 68 63.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 4.4e-14 81.3 72 63.9
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 5.7e-14 80.9 70 61.4
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.7e-14 80.9 70 62.9
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.7e-14 80.9 72 63.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.7e-14 80.9 72 63.9
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 7.5e-14 80.5 85 52.9
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 7.5e-14 80.5 78 56.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 7.5e-14 80.5 73 61.6
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.5e-14 80.5 74 59.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 9.8e-14 80.1 68 63.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.8e-14 80.1 77 59.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 9.8e-14 80.1 67 65.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 9.8e-14 80.1 72 62.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.3e-13 79.7 82 54.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.3e-13 79.7 84 54.8
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.7e-13 79.3 65 64.6
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-13 79.3 73 57.5
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.7e-13 79.3 67 64.2
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.7e-13 79.3 80 57.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.2e-13 79.0 68 61.8
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.2e-13 79.0 76 61.8
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.8e-13 78.6 59 71.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.8e-13 78.6 73 56.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.8e-13 78.6 86 55.8
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.8e-13 78.6 75 61.3
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.8e-13 78.6 71 63.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 2.8e-13 78.6 73 61.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.8e-13 78.6 67 62.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.7e-13 78.2 65 61.5
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 3.7e-13 78.2 66 60.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.7e-13 78.2 75 60.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 3.7e-13 78.2 67 62.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.7e-13 78.2 67 62.7
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 4.9e-13 77.8 90 51.1
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.9e-13 77.8 77 59.7
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 6.3e-13 77.4 68 60.3
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 8.3e-13 77.0 52 78.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 8.3e-13 77.0 83 53.0
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-12 76.6 73 56.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.1e-12 76.6 73 56.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 56.8
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 56.8
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 56.8
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 56.8
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.1e-12 76.6 74 56.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.1e-12 76.6 89 52.8
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.4e-12 76.3 65 66.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.4e-12 76.3 72 55.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.8e-12 75.9 70 58.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.8e-12 75.9 84 58.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.8e-12 75.9 76 56.6
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.8e-12 75.9 72 59.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.4e-12 75.5 65 66.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.1e-12 75.1 72 58.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 3.1e-12 75.1 78 56.4
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.1e-12 74.7 68 63.2
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.1e-12 74.7 84 57.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.1e-12 74.7 84 57.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 5.4e-12 74.3 69 59.4
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 5.4e-12 74.3 67 59.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 7.0e-12 73.9 73 54.8
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.0e-12 73.9 66 68.2
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 7.0e-12 73.9 82 52.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 9.2e-12 73.6 70 58.6
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 9.2e-12 73.6 70 61.4
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.6e-11 72.8 73 60.3
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.0e-11 72.4 67 59.7
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.7e-11 72.0 66 57.6
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.7e-11 72.0 73 56.2
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.7e-11 72.0 73 56.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.7e-11 72.0 72 56.9
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.5e-11 71.2 67 58.2
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 4.5e-11 71.2 83 49.4
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.9e-11 70.9 66 57.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 5.9e-11 70.9 73 54.8
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.9e-11 70.9 61 65.6
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.9e-11 70.9 70 55.7
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.8e-11 70.5 64 62.5
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.0e-10 70.1 70 61.4
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.0e-10 70.1 82 52.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.3e-10 69.7 68 58.8
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 8.6e-10 67.0 64 56.2
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 8.6e-10 67.0 67 61.2
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.1e-09 66.6 66 56.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-09 66.6 67 53.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.1e-09 66.6 67 53.7
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-09 66.6 67 53.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.1e-09 66.6 66 59.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.5e-09 66.2 72 58.3
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.3e-09 65.1 79 48.1
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.3e-09 64.7 72 52.8
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.3e-09 64.7 67 58.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.2e-08 63.2 86 45.3
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.6e-08 62.8 66 54.5
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.7e-08 61.2 84 48.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 6.1e-08 60.8 70 51.4
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.0e-07 60.1 64 56.2
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.0e-07 60.1 67 56.7
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.0e-07 60.1 67 56.7
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.4e-07 59.7 76 44.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.8e-07 59.3 65 55.4
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 1.8e-07 59.3 81 46.9
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.3e-07 58.9 75 46.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.3e-07 58.9 76 46.1
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.0e-07 58.2 84 46.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 4.0e-07 58.2 61 55.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 5.2e-07 57.8 71 50.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 6.8e-07 57.4 71 50.7
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.2e-06 56.6 57 54.4
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 2.6e-06 55.5 52 61.5
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 3.4e-06 55.1 51 62.7
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 9.8e-06 53.5 50 64.0


User provided reference genes

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