Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344931 Helianthus annuus HOM05D006595 ORTHO05D008238 2.9e-82 308.5 158 100.0
ECA248G3199 Erigeron canadensis HOM05D006595 ORTHO05D008238 2.0e-43 179.5 143 69.9
Lsat_1_v5_gn_1_68280 Lactuca sativa HOM05D006595 ORTHO05D008238 2.2e-37 159.5 125 73.6
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 9.5e-33 144.1 133 57.1
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 9.8e-30 134.0 143 57.3
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 8.3e-29 131.0 125 59.2
Peaxi162Scf00441g00213 Petunia axillaris HOM05D006595 ORTHO05D008238 3.2e-28 129.0 143 53.8
CAN.G140.24 Capsicum annuum HOM05D006595 ORTHO05D008238 1.6e-27 126.7 141 55.3
Nitab4.5_0005477g0080 Nicotiana tabacum HOM05D006595 ORTHO05D008238 2.0e-27 126.3 151 54.3
EL10Ac4g10339 Beta vulgaris HOM05D006595 ORTHO05D008238 3.5e-27 125.6 142 50.7
AUR62019207 Chenopodium quinoa HOM05D006595 ORTHO05D008238 4.6e-27 125.2 139 54.7
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 4.6e-27 125.2 138 53.6
Nitab4.5_0001620g0030 Nicotiana tabacum HOM05D006595 ORTHO05D008238 4.6e-27 125.2 151 55.0
SGA_v2.0_scaffold78G25462 Striga asiatica HOM05D006595 ORTHO05D008238 5.9e-27 124.8 145 53.1
AUR62000037 Chenopodium quinoa HOM05D006595 ORTHO05D008238 1.7e-26 123.2 139 54.7
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 1.7e-26 123.2 121 53.7
Lj2A705G49 Lonicera japonica HOM05D006595 ORTHO05D008238 2.3e-26 122.9 82 70.7
Dinv34743 Davidia involucrata HOM05D006595 ORTHO05D008238 3.0e-26 122.5 77 75.3
ClCG02G023820 Citrullus lanatus HOM05D006595 ORTHO05D008238 3.9e-26 122.1 138 52.9
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 3.9e-26 122.1 125 56.0
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 5.0e-26 121.7 139 48.2
Nn7g35969 Nelumbo nucifera HOM05D006595 ORTHO05D008238 5.0e-26 121.7 114 58.8
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 6.6e-26 121.3 122 52.5
Sopen01g002130 Solanum pennellii HOM05D006595 ORTHO05D008238 6.6e-26 121.3 144 52.8
CSS0011176 Camellia sinensis var. sinensis HOM05D006595 ORTHO05D008238 1.1e-25 120.6 143 54.5
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 1.1e-25 120.6 142 50.7
PGSC0003DMG401032143 Solanum tuberosum HOM05D006595 ORTHO05D008238 1.1e-25 120.6 145 52.4
Ah.04g161600 Amaranthus hybridus HOM05D000750 ORTHO05D000714 1.5e-25 120.2 119 58.8
FvH4_3g44681 Fragaria vesca HOM05D006595 ORTHO05D008238 1.5e-25 120.2 139 52.5
Solyc01g006130.4 Solanum lycopersicum HOM05D006595 ORTHO05D008238 2.5e-25 119.4 144 51.4
FAN21G3045 Fragaria x ananassa HOM05D000750 ORTHO05D000714 4.3e-25 118.6 117 57.3
Rhsim13G0228400 Rhododendron simsii HOM05D000750 ORTHO05D000714 4.3e-25 118.6 118 62.7
CANSAT11G0726 Cannabis sativa HOM05D006595 ORTHO05D008238 5.6e-25 118.2 141 50.4
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 5.6e-25 118.2 122 54.1
FAN16G1668 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.6e-25 118.2 117 57.3
FAN25G3451 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.6e-25 118.2 146 50.7
Gohir.A08G079300 Gossypium hirsutum HOM05D006595 ORTHO05D008238 5.6e-25 118.2 142 47.9
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 5.6e-25 118.2 144 50.7
SalBow6G7140 Salvia bowleyana HOM05D006595 ORTHO05D008238 7.3e-25 117.9 144 50.0
MSTRG.208 Avicennia marina HOM05D006595 ORTHO05D008238 9.5e-25 117.5 145 49.7
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 1.2e-24 117.1 138 52.2
Gohir.D11G216800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 1.2e-24 117.1 142 48.6
TAR636G1600 Trochodendron aralioides HOM05D006595 ORTHO05D008238 1.2e-24 117.1 140 52.9
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 1.6e-24 116.7 117 55.6
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.6e-24 116.7 141 50.4
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 2.8e-24 115.9 139 51.1
Gohir.A11G206900 Gossypium hirsutum HOM05D006595 ORTHO05D008238 4.7e-24 115.2 142 47.9
Lj2A706G26 Lonicera japonica HOM05D006595 ORTHO05D008238 4.7e-24 115.2 115 58.3
VMungo0720G3035 Vigna mungo HOM05D006595 ORTHO05D008238 4.7e-24 115.2 107 54.2
Gohir.D08G088800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 6.2e-24 114.8 142 46.5
Gorai.004G093500 Gossypium raimondii HOM05D006595 ORTHO05D008238 1.0e-23 114.0 142 47.2
CsaV3_4G023550 Cucumis sativus L. HOM05D006595 ORTHO05D008238 1.8e-23 113.2 138 49.3
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 2.3e-23 112.8 115 54.8
MELO3C014661.2 Cucumis melo HOM05D006595 ORTHO05D008238 2.3e-23 112.8 138 50.0
Gorai.007G232900 Gossypium raimondii HOM05D006595 ORTHO05D008238 2.3e-23 112.8 111 55.0
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 2.3e-23 112.8 136 51.5
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 5.2e-23 111.7 115 53.9
Eucgr.B03632 Eucalyptus grandis HOM05D006595 ORTHO05D008238 8.9e-23 110.9 109 56.9
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 1.2e-22 110.5 156 48.7
Migut.F01376 Erythranthe guttata HOM05D006595 ORTHO05D008238 2.0e-22 109.8 150 52.7
PSO339G5391 Papaver somniferum HOM05D006595 ORTHO05D008238 2.6e-22 109.4 146 50.0
Cc01_g00990 Coffea canephora HOM05D006595 ORTHO05D008238 3.4e-22 109.0 139 48.2
Lj5g0010961 Lotus japonicus HOM05D006595 ORTHO05D008238 4.4e-22 108.6 121 49.6
PSO384G3168 Papaver somniferum HOM05D006595 ORTHO05D008238 4.4e-22 108.6 146 49.3
vmacro04249 Vaccinium macrocarpon HOM05D006595 ORTHO05D008238 4.4e-22 108.6 210 40.5
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 7.5e-22 107.8 137 48.9
CDE04G0274 Ceratophyllum demersum HOM05D006595 ORTHO05D008238 9.8e-22 107.5 117 53.8
Sed0019652 Sechium edule HOM05D006595 ORTHO05D008238 9.8e-22 107.5 137 48.2
QL01p010258 Quercus lobata HOM05D006595 ORTHO05D008238 3.7e-21 105.5 79 62.0
QL08p062509 Quercus lobata HOM05D006595 ORTHO05D008238 3.7e-21 105.5 79 62.0
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 1.1e-20 104.0 117 50.4
Os08g0463900 Oryza sativa ssp. japonica HOM05D006595 ORTHO05D008238 1.9e-20 103.2 128 49.2
Phvul.007G006200 Phaseolus vulgaris HOM05D006595 ORTHO05D008238 1.9e-20 103.2 126 46.8
Aqoxy2G00094 Aquilegia oxysepala HOM05D006595 ORTHO05D008238 5.4e-20 101.7 134 52.2
MSTRG.8324 Avicennia marina HOM05D006595 ORTHO05D008238 7.0e-20 101.3 145 45.5
Sc16g0012000 Simmondsia chinensis HOM05D006595 ORTHO05D008238 2.0e-19 99.8 132 50.0
Oeu038858.2 Olea europaea HOM05D006595 ORTHO05D008238 3.5e-19 99.0 142 51.4
Hund06674 Selenicereus undatus HOM05D006595 ORTHO05D008238 3.5e-19 99.0 88 58.0
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 1.3e-18 97.1 138 44.2
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 1.7e-18 96.7 137 48.2
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 2.3e-18 96.3 140 47.9
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 3.0e-18 95.9 144 45.8
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 3.9e-18 95.5 136 48.5
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 6.6e-18 94.7 134 41.8
Ca_11377_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 6.6e-18 94.7 105 54.3
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 8.6e-18 94.4 134 43.3
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 1.5e-17 93.6 127 40.2
HPP92_016182 Vanilla planifolia HOM05D006595 ORTHO05D008238 1.5e-17 93.6 104 51.0
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 1.9e-17 93.2 137 44.5
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 1.9e-17 93.2 137 44.5
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 2.5e-17 92.8 127 40.2
Psat6g238960 Pisum sativum HOM05D006595 ORTHO05D008238 2.5e-17 92.8 101 51.5
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 3.3e-17 92.4 132 44.7
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 4.3e-17 92.0 127 42.5
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 4.3e-17 92.0 127 40.2
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 5.6e-17 91.7 127 40.2
Glyma.10G293900 Glycine max HOM05D006595 ORTHO05D008238 5.6e-17 91.7 105 47.6
Lalb_Chr02g0143771 Lupinus albus HOM05D006595 ORTHO05D008238 5.6e-17 91.7 128 46.1
Medtr1g116170 Medicago truncatula HOM05D006595 ORTHO05D008238 5.6e-17 91.7 75 61.3
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 7.3e-17 91.3 128 45.3
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 9.5e-17 90.9 127 39.4
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 9.5e-17 90.9 125 42.4
arahy.Tifrunner.gnm1.ann1.SSSL8J Arachis hypogaea HOM05D006595 ORTHO05D008238 4.7e-16 88.6 140 45.0
arahy.Tifrunner.gnm1.ann1.ZL64GD Arachis hypogaea HOM05D006595 ORTHO05D008238 4.7e-16 88.6 118 47.5
TPR.G10430 Trifolium pratense HOM05D006595 ORTHO05D008238 8.1e-16 87.8 76 57.9
Glyma.20G243800 Glycine max HOM05D006595 ORTHO05D008238 1.1e-15 87.4 53 71.7
Pp3c3_12490 Physcomitrium patens HOM05D006595 ORTHO05D008238 6.8e-15 84.7 133 42.9
HPP92_026734 Vanilla planifolia HOM05D006595 ORTHO05D008238 8.9e-15 84.3 149 41.6
ATR1149G131 Amborella trichopoda HOM05D006595 ORTHO05D008238 1.2e-14 84.0 40 85.0
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.5e-14 83.6 105 48.6
Mapoly0120s0023 Marchantia polymorpha HOM05D006595 ORTHO05D008238 2.0e-14 83.2 125 40.0
CBR_g22940 Chara braunii HOM05D006595 ORTHO05D008238 9.8e-14 80.9 149 39.6
SMO331G0037 Selaginella moellendorffii HOM05D006595 ORTHO05D008238 9.8e-14 80.9 75 58.7
unitig_747.g21415 Utricularia gibba HOM05D006595 ORTHO05D008238 9.8e-14 80.9 145 42.8
SEGI_11759 Sequoiadendron giganteum HOM05D006595 ORTHO05D008238 1.3e-13 80.5 114 43.9
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 1.7e-13 80.1 122 39.3
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 4.9e-13 78.6 122 41.8
Cre11.g475850 Chlamydomonas reinhardtii HOM05D006595 ORTHO05D008238 6.4e-13 78.2 42 71.4
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 3.2e-12 75.9 148 39.9
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 3.2e-12 75.9 85 49.4
Pp3c4_29200 Physcomitrium patens HOM05D006595 ORTHO05D008238 7.1e-12 74.7 146 34.2
MD11G1014500 Malus domestica HOM05D006595 ORTHO05D008238 1.2e-11 73.9 32 90.6
FAN11G2269 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.1e-11 73.2 69 53.6
MCO03G122 Micromonas commoda HOM05D006595 ORTHO05D008238 3.5e-11 72.4 35 80.0
FvH4_3g44571 Fragaria vesca HOM05D006595 ORTHO05D008238 4.6e-11 72.0 30 93.3
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.6e-11 72.0 30 93.3
BcaB06g29011 Brassica carinata HOM05D006595 ORTHO05D008238 6.6e-10 68.2 122 40.2
PRCOL_00006415 Prasinoderma coloniale HOM05D006595 ORTHO05D008238 9.5e-09 64.3 53 56.6


User provided reference genes

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