Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344321 Helianthus annuus HOM05D003029 ORTHO05D003413 4.1e-220 768.1 478 100.0
HanXRQChr01g0022171 Helianthus annuus HOM05D003029 ORTHO05D003413 4.2e-92 342.8 615 48.1
ECA248G1735 Erigeron canadensis HOM05D003029 ORTHO05D003413 4.1e-63 246.5 723 39.7
Lsat_1_v5_gn_1_70641 Lactuca sativa HOM05D003029 ORTHO05D003413 1.2e-59 235.0 573 50.3
Actinidia35843 Actinidia chinensis HOM05D003029 ORTHO05D003413 3.8e-24 117.1 261 34.5
TAR362G1056 Trochodendron aralioides HOM05D003029 ORTHO05D003413 1.2e-22 112.1 533 36.6
Actinidia21255 Actinidia chinensis HOM05D003029 ORTHO05D003413 4.6e-22 110.2 263 33.8
Actinidia11454 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.3e-21 108.6 595 37.0
SalBow3G0925 Salvia bowleyana HOM05D003029 ORTHO05D003413 1.3e-21 108.6 232 37.1
Actinidia21254 Actinidia chinensis HOM05D003029 ORTHO05D003413 3.9e-21 107.1 261 33.3
Peaxi162Scf00423g00411 Petunia axillaris HOM05D003029 ORTHO05D003413 1.1e-20 105.5 265 32.8
Migut.G00757 Erythranthe guttata HOM05D003029 ORTHO05D003413 2.5e-20 104.4 547 36.4
CSS0049755 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 5.6e-20 103.2 588 30.6
FvH4_4g13340 Fragaria vesca HOM05D003029 ORTHO05D003413 1.2e-19 102.1 239 33.5
FAN12G1114 Fragaria x ananassa HOM05D003029 ORTHO05D003413 1.2e-19 102.1 239 33.5
Nitab4.5_0000676g0030 Nicotiana tabacum HOM05D003029 ORTHO05D003413 1.2e-19 102.1 262 34.4
PSO017G1724 Papaver somniferum HOM05D003029 ORTHO05D003413 1.2e-19 102.1 249 32.9
FAN22G0425 Fragaria x ananassa HOM05D003029 ORTHO05D003413 2.1e-19 101.3 239 33.1
FAN17G0226 Fragaria x ananassa HOM05D003029 ORTHO05D003413 3.6e-19 100.5 239 33.1
arahy.Tifrunner.gnm1.ann1.R3AU9F Arachis hypogaea HOM05D003029 ORTHO05D003413 4.7e-19 100.1 254 31.5
CiPaw.01G117300 Carya illinoinensis HOM05D003029 ORTHO05D003413 4.7e-19 100.1 588 35.7
Nn3g20072 Nelumbo nucifera HOM05D003029 ORTHO05D003413 6.2e-19 99.8 269 32.0
Nitab4.5_0006920g0010 Nicotiana tabacum HOM05D003029 ORTHO05D003413 1.1e-18 99.0 267 31.8
Thecc.04G195700 Theobroma cacao HOM05D003029 ORTHO05D003413 1.1e-18 99.0 261 33.0
arahy.Tifrunner.gnm1.ann1.AU34HA Arachis hypogaea HOM05D003029 ORTHO05D003413 1.4e-18 98.6 254 31.5
COL.COLO4_20221 Corchorus olitorius HOM05D003029 ORTHO05D003413 1.4e-18 98.6 262 33.6
Glyma.18G001900 Glycine max HOM05D003029 ORTHO05D003413 1.4e-18 98.6 589 33.6
Haze_11649 Corylus avellana HOM05D003029 ORTHO05D003413 1.8e-18 98.2 375 34.4
Nn3g20075 Nelumbo nucifera HOM05D003029 ORTHO05D003413 1.8e-18 98.2 234 35.0
Nitab4.5_0002260g0050 Nicotiana tabacum HOM05D003029 ORTHO05D003413 1.8e-18 98.2 257 33.1
Cc03_g08440 Coffea canephora HOM05D003029 ORTHO05D003413 2.4e-18 97.8 256 33.6
Oeu043441.1 Olea europaea HOM05D003029 ORTHO05D003413 3.1e-18 97.4 266 31.6
Solyc12g098463.1 Solanum lycopersicum HOM05D003029 ORTHO05D003413 5.2e-18 96.7 76 63.2
MSTRG.9800 Avicennia marina HOM05D003029 ORTHO05D003413 6.9e-18 96.3 236 35.2
DCAR_026643 Daucus carota HOM05D003029 ORTHO05D003413 6.9e-18 96.3 248 33.5
FAN07G2221 Fragaria x ananassa HOM05D003029 ORTHO05D003413 6.9e-18 96.3 241 32.0
Sopen12g033250 Solanum pennellii HOM05D003029 ORTHO05D003413 8.9e-18 95.9 76 63.2
Cfa014958 Carpinus fangiana HOM05D003029 ORTHO05D003413 1.2e-17 95.5 268 32.1
MSTRG.4243 Avicennia marina HOM05D003029 ORTHO05D003413 1.5e-17 95.1 569 28.5
Sopen05g032240 Solanum pennellii HOM05D003029 ORTHO05D003413 2.0e-17 94.7 75 61.3
PGSC0003DMG400015747 Solanum tuberosum HOM05D003029 ORTHO05D003413 2.0e-17 94.7 75 60.0
RcHm_v2.0_Chr4g0413691 Rosa chinensis HOM05D003029 ORTHO05D003413 2.6e-17 94.4 248 31.9
Solyc05g053770.4 Solanum lycopersicum HOM05D003029 ORTHO05D003413 2.6e-17 94.4 75 61.3
Prupe.1G164200 Prunus persica HOM05D003029 ORTHO05D003413 3.4e-17 94.0 243 32.9
GSVIVG01021020001 Vitis vinifera HOM05D003029 ORTHO05D003413 3.4e-17 94.0 586 33.1
Rhsim02G0061600 Rhododendron simsii HOM05D003029 ORTHO05D003413 7.6e-17 92.8 258 33.7
TAR636G0249 Trochodendron aralioides HOM05D003029 ORTHO05D003413 9.9e-17 92.4 244 33.6
Lalb_Chr23g0278361 Lupinus albus HOM05D003029 ORTHO05D003413 1.3e-16 92.0 244 33.2
Gorai.011G153200 Gossypium raimondii HOM05D003029 ORTHO05D003413 1.7e-16 91.7 252 32.9
Duzib212G0885 Durio zibethinus HOM05D003029 ORTHO05D003413 2.2e-16 91.3 77 55.8
Gohir.D10G138100 Gossypium hirsutum HOM05D003029 ORTHO05D003413 2.2e-16 91.3 252 32.9
MD04G1017100 Malus domestica HOM05D003029 ORTHO05D003413 2.2e-16 91.3 589 33.1
Lj2C1122G5 Lonicera japonica HOM05D003029 ORTHO05D003413 2.9e-16 90.9 78 59.0
Glyma.05G152400 Glycine max HOM05D003029 ORTHO05D003413 3.8e-16 90.5 255 32.5
Glyma.08G110100 Glycine max HOM05D003029 ORTHO05D003413 3.8e-16 90.5 255 33.3
Gohir.A10G127900 Gossypium hirsutum HOM05D003029 ORTHO05D003413 8.4e-16 89.4 252 32.5
PSO063G2363 Papaver somniferum HOM05D003029 ORTHO05D003413 8.4e-16 89.4 241 31.1
Sabra17G0052100 Salix brachista HOM05D003029 ORTHO05D003413 1.4e-15 88.6 252 32.5
Gohir.D02G022800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 3.2e-15 87.4 254 30.7
CAN.G767.12 Capsicum annuum HOM05D003029 ORTHO05D003413 5.4e-15 86.7 241 32.8
Cpa.g.sc157.52 Carica papaya HOM05D003029 ORTHO05D003413 5.4e-15 86.7 77 51.9
Ciclev10005071m.g Citrus clementina HOM05D003029 ORTHO05D003413 5.4e-15 86.7 77 58.4
Duzib151G1197 Durio zibethinus HOM05D003029 ORTHO05D003413 5.4e-15 86.7 266 30.8
Nitab4.5_0000850g0180 Nicotiana tabacum HOM05D003029 ORTHO05D003413 5.4e-15 86.7 256 32.0
Atru.chr6.1447 Acer truncatum HOM05D003029 ORTHO05D003413 7.1e-15 86.3 546 35.5
EL10Ac3g07458 Beta vulgaris HOM05D003029 ORTHO05D003413 9.3e-15 85.9 77 57.1
Psat7g075040 Pisum sativum HOM05D003029 ORTHO05D003413 1.2e-14 85.5 77 58.4
CiPaw.02G064700 Carya illinoinensis HOM05D003029 ORTHO05D003413 2.1e-14 84.7 259 31.7
AUR62018560 Chenopodium quinoa HOM05D003029 ORTHO05D003413 2.7e-14 84.3 348 29.0
Duzib268G0331 Durio zibethinus HOM05D003029 ORTHO05D003413 2.7e-14 84.3 262 32.1
Hund19006 Selenicereus undatus HOM05D003029 ORTHO05D003413 2.7e-14 84.3 384 28.6
MD04G1017000 Malus domestica HOM05D003029 ORTHO05D003413 4.6e-14 83.6 234 33.8
PGR083G2864 Punica granatum HOM05D003029 ORTHO05D003413 4.6e-14 83.6 243 34.2
DCAR_004743 Daucus carota HOM05D003029 ORTHO05D003413 6.0e-14 83.2 77 51.9
MBI07_g27661_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 6.0e-14 83.2 233 30.9
Gohir.A02G019500 Gossypium hirsutum HOM05D003029 ORTHO05D003413 7.8e-14 82.8 254 29.5
Potri.017G058600 Populus trichocarpa HOM05D003029 ORTHO05D003413 1.0e-13 82.4 270 28.9
Sabra16G0202400 Salix brachista HOM05D003029 ORTHO05D003413 1.3e-13 82.0 261 31.0
MELO3C006294.2 Cucumis melo HOM05D003029 ORTHO05D003413 1.7e-13 81.6 79 50.6
Sc05g0001900 Simmondsia chinensis HOM05D003029 ORTHO05D003413 1.7e-13 81.6 286 30.1
TPR.G11807 Trifolium pratense HOM05D003029 ORTHO05D003413 1.7e-13 81.6 265 30.9
CsaV3_3G010750 Cucumis sativus L. HOM05D003029 ORTHO05D003413 2.3e-13 81.3 79 50.6
Nitab4.5_0006920g0030 Nicotiana tabacum HOM05D003029 ORTHO05D003413 2.3e-13 81.3 493 33.3
Rhsim09G0059700 Rhododendron simsii HOM05D003029 ORTHO05D003413 3.0e-13 80.9 554 34.1
TWI36G1114 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 3.0e-13 80.9 547 27.6
Medtr8g081570 Medicago truncatula HOM05D003029 ORTHO05D003413 3.9e-13 80.5 256 32.8
Manes.13G051200 Manihot esculenta HOM05D003029 ORTHO05D003413 5.1e-13 80.1 229 31.9
Sabra17G0052200 Salix brachista HOM05D003029 ORTHO05D003413 5.1e-13 80.1 242 30.6
Prupe.8G196300 Prunus persica HOM05D003029 ORTHO05D003413 6.6e-13 79.7 254 30.7
Lj4g0000581 Lotus japonicus HOM05D003029 ORTHO05D003413 1.1e-12 79.0 258 31.0
SGA_v2.0_scaffold270G46323 Striga asiatica HOM05D003029 ORTHO05D003413 1.1e-12 79.0 544 30.7
BolC1t05561H Brassica oleracea HOM05D003029 ORTHO05D003413 1.5e-12 78.6 537 29.6
Cc01_g16520 Coffea canephora HOM05D003029 ORTHO05D003413 1.9e-12 78.2 82 50.0
Sabra16G0202200 Salix brachista HOM05D003029 ORTHO05D003413 2.5e-12 77.8 260 30.8
MD13G1282000 Malus domestica HOM05D003029 ORTHO05D003413 3.3e-12 77.4 234 31.6
GSVIVG01004954001 Vitis vinifera HOM05D003029 ORTHO05D003413 3.3e-12 77.4 495 27.5
CDE05G0723 Ceratophyllum demersum HOM05D003029 ORTHO05D003413 4.3e-12 77.0 78 52.6
Phvul.003G050800 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 4.3e-12 77.0 256 31.2
Gohir.D09G199800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 5.6e-12 76.6 261 29.9
Manes.03G144600 Manihot esculenta HOM05D003029 ORTHO05D003413 5.6e-12 76.6 260 30.0
vmacro02792 Vaccinium macrocarpon HOM05D003029 ORTHO05D003413 5.6e-12 76.6 266 31.6
AUR62020859 Chenopodium quinoa HOM05D003029 ORTHO05D003413 7.3e-12 76.3 261 31.8
Ca_17981_v3 Cicer arietinum L. HOM05D003029 ORTHO05D003413 7.3e-12 76.3 419 26.3
Gorai.006G223500 Gossypium raimondii HOM05D003029 ORTHO05D003413 7.3e-12 76.3 261 29.5
CAN.G765.36 Capsicum annuum HOM05D003029 ORTHO05D003413 9.6e-12 75.9 316 34.5
Phvul.003G050700 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 9.6e-12 75.9 235 31.5
Atru.chr4.1590 Acer truncatum HOM05D003029 ORTHO05D003413 1.6e-11 75.1 591 32.7
Ah.13g077980 Amaranthus hybridus HOM05D003029 ORTHO05D003413 1.6e-11 75.1 88 44.3
BNapus_Darmor_BZH_scaffold_109p00150 Brassica napus HOM05D003029 ORTHO05D003413 1.6e-11 75.1 247 32.4
CiPaw.14G040000 Carya illinoinensis HOM05D003029 ORTHO05D003413 1.6e-11 75.1 536 39.6
CSS0036198 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 2.1e-11 74.7 74 52.7
Gorai.005G028200 Gossypium raimondii HOM05D003029 ORTHO05D003413 2.1e-11 74.7 251 28.3
MBI07_g42750_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 2.8e-11 74.3 224 31.7
BraA01t04389Z Brassica rapa HOM05D003029 ORTHO05D003413 3.6e-11 73.9 517 31.5
Lalb_Chr13g0294851 Lupinus albus HOM05D003029 ORTHO05D003413 3.6e-11 73.9 264 31.4
Sc13g0000380 Simmondsia chinensis HOM05D003029 ORTHO05D003413 3.6e-11 73.9 577 32.6
Potri.017G058500 Populus trichocarpa HOM05D003029 ORTHO05D003413 6.2e-11 73.2 575 32.5
TAR365G0314 Trochodendron aralioides HOM05D003029 ORTHO05D003413 8.1e-11 72.8 270 28.5
Aqoxy2G03937 Aquilegia oxysepala HOM05D003029 ORTHO05D003413 1.1e-10 72.4 226 32.7
AT5G43490 Arabidopsis thaliana HOM05D003029 ORTHO05D003413 1.1e-10 72.4 79 51.9
Sp2g18960 Schrenkiella parvula HOM05D003029 ORTHO05D003413 1.1e-10 72.4 495 25.9
THA.LOC104822483 Tarenaya hassleriana HOM05D003029 ORTHO05D003413 1.1e-10 72.4 72 50.0
BraA06t26818Z Brassica rapa HOM05D003029 ORTHO05D003413 1.4e-10 72.0 82 52.4
Lalb_Chr07g0186821 Lupinus albus HOM05D003029 ORTHO05D003413 1.4e-10 72.0 637 30.5
TWI36G0576 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.4e-10 72.0 535 28.4
TWI75G0963 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.4e-10 72.0 543 27.8
VMungo0251G2529 Vigna mungo HOM05D003029 ORTHO05D003413 1.4e-10 72.0 221 33.9
Dinv14526 Davidia involucrata HOM05D003029 ORTHO05D003413 1.8e-10 71.6 565 29.6
DCAR_012677 Daucus carota HOM05D003029 ORTHO05D003413 2.4e-10 71.2 78 48.7
A06p39050 Brassica napus HOM05D003029 ORTHO05D003413 4.0e-10 70.5 231 33.8
ATR0561G140 Amborella trichopoda HOM05D003029 ORTHO05D003413 5.3e-10 70.1 554 36.6
CARHR292000 Cardamine hirsuta HOM05D003029 ORTHO05D003413 6.9e-10 69.7 79 49.4
BcaC05g29857 Brassica carinata HOM05D003029 ORTHO05D003413 9.0e-10 69.3 82 46.3
Manes.12G049400 Manihot esculenta HOM05D003029 ORTHO05D003413 9.0e-10 69.3 246 30.9
ClCG05G003130 Citrullus lanatus HOM05D003029 ORTHO05D003413 1.2e-09 68.9 533 28.1
unitig_8.g3407 Utricularia gibba HOM05D003029 ORTHO05D003413 1.2e-09 68.9 247 29.1
Migut.D02515 Erythranthe guttata HOM05D003029 ORTHO05D003413 1.5e-09 68.6 78 50.0
CsaV3_2G011760 Cucumis sativus L. HOM05D003029 ORTHO05D003413 2.0e-09 68.2 268 28.4
Hma1.2p1_0349F.1_g132190 Hydrangea macrophylla HOM05D003029 ORTHO05D003413 2.0e-09 68.2 246 29.3
THA.LOC104808800 Tarenaya hassleriana HOM05D003029 ORTHO05D003413 3.4e-09 67.4 75 46.7
CANSAT78G1052 Cannabis sativa HOM05D003029 ORTHO05D003413 4.5e-09 67.0 334 29.3
HPP92_025250 Vanilla planifolia HOM05D003029 ORTHO05D003413 4.5e-09 67.0 235 28.1
Haze_03354 Corylus avellana HOM05D003029 ORTHO05D003413 5.8e-09 66.6 251 35.1
Carub.0008s0826 Capsella rubella HOM05D003029 ORTHO05D003413 7.6e-09 66.2 236 33.1
ClCG06G007970 Citrullus lanatus HOM05D003029 ORTHO05D003413 9.9e-09 65.9 269 29.4
SalBow8G5155 Salvia bowleyana HOM05D003029 ORTHO05D003413 9.9e-09 65.9 238 29.8
AL625U10010 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 1.3e-08 65.5 233 32.6
Glyma.11G255200 Glycine max HOM05D003029 ORTHO05D003413 1.3e-08 65.5 576 28.6
QL06p026140 Quercus lobata HOM05D003029 ORTHO05D003413 1.3e-08 65.5 302 28.1
Ah.04g149350 Amaranthus hybridus HOM05D003029 ORTHO05D003413 2.2e-08 64.7 75 48.0
BcaB04g21298 Brassica carinata HOM05D003029 ORTHO05D003413 2.9e-08 64.3 502 30.7
MELO3C020427.2 Cucumis melo HOM05D003029 ORTHO05D003413 3.8e-08 63.9 269 28.6
Oeu056423.1 Olea europaea HOM05D003029 ORTHO05D003413 8.4e-08 62.8 75 48.0
VMungo0251G3135 Vigna mungo HOM05D003029 ORTHO05D003413 8.4e-08 62.8 584 28.6
TWI18G0251 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.1e-07 62.4 534 28.3
Thhalv10020618m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 1.4e-07 62.0 554 25.8
Rhsim13G0050000 Rhododendron simsii HOM05D003029 ORTHO05D003413 1.4e-07 62.0 261 30.3
Sed0005118 Sechium edule HOM05D003029 ORTHO05D003413 1.9e-07 61.6 260 27.7
Zm00001eb036180 Zea mays HOM05D003029 ORTHO05D003413 1.9e-07 61.6 73 42.5
Thhalv10004154m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 2.4e-07 61.2 525 30.9
Sp3g06210 Schrenkiella parvula HOM05D003029 ORTHO05D003413 2.4e-07 61.2 540 28.9
Sed0025519 Sechium edule HOM05D003029 ORTHO05D003413 2.4e-07 61.2 257 29.6
C07p39290 Brassica napus HOM05D003029 ORTHO05D003413 3.2e-07 60.8 506 30.0
BolC7t44449H Brassica oleracea HOM05D003029 ORTHO05D003413 3.2e-07 60.8 506 30.0
Sp3g06230 Schrenkiella parvula HOM05D003029 ORTHO05D003413 3.2e-07 60.8 544 28.9
BraA03t12696Z Brassica rapa HOM05D003029 ORTHO05D003413 4.2e-07 60.5 521 30.5
MBI07_g16779_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 5.4e-07 60.1 70 44.3
Medtr3g084030 Medicago truncatula HOM05D005635 ORTHO05D006838 5.4e-07 60.1 31 83.9
Carub.0003s0681 Capsella rubella HOM05D003029 ORTHO05D003413 7.1e-07 59.7 544 29.4
Dinv27203 Davidia involucrata HOM05D003029 ORTHO05D003413 7.1e-07 59.7 31 83.9
Potri.001G319600 Populus trichocarpa HOM05D003029 ORTHO05D003413 9.3e-07 59.3 31 83.9
BcaC05g29734 Brassica carinata HOM05D003029 ORTHO05D003413 1.2e-06 58.9 227 30.4
BcaC06g30775 Brassica carinata HOM05D003029 ORTHO05D003413 1.2e-06 58.9 520 29.0
Zm00001eb210840 Zea mays HOM05D003029 ORTHO05D003413 1.2e-06 58.9 238 30.3
Psat5g100760 Pisum sativum HOM05D003029 ORTHO05D003413 1.6e-06 58.5 223 35.9
SalBow6G0319 Salvia bowleyana HOM05D003029 ORTHO05D003413 1.6e-06 58.5 571 30.3
SalBow6G1280 Salvia bowleyana HOM05D003029 ORTHO05D003413 1.6e-06 58.5 571 30.3
A03p35170 Brassica napus HOM05D003029 ORTHO05D003413 2.1e-06 58.2 527 30.6
C03p42770 Brassica napus HOM05D003029 ORTHO05D003413 2.1e-06 58.2 510 31.0
A05p40910 Brassica napus HOM05D003029 ORTHO05D003413 2.7e-06 57.8 487 27.9
BraA05t22820Z Brassica rapa HOM05D003029 ORTHO05D003413 2.7e-06 57.8 487 27.9
Oeu049048.2 Olea europaea HOM05D003029 ORTHO05D003413 2.7e-06 57.8 244 31.1
SHI28770 Sapria himalayana HOM05D003029 ORTHO05D003413 2.7e-06 57.8 86 45.3
Dinv38178 Davidia involucrata HOM05D003029 ORTHO05D003413 3.5e-06 57.4 31 77.4
C05p60010 Brassica napus HOM05D003029 ORTHO05D003413 6.0e-06 56.6 489 27.8


User provided reference genes

Program Settings