Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.4e-33 144.8 67 100.0
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.1e-30 136.0 67 94.0
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.8e-25 118.6 61 85.2
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 6.9e-25 116.7 69 78.3
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.2e-24 115.9 66 81.8
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 5.8e-24 113.6 61 80.3
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 7.6e-24 113.2 61 82.0
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 7.6e-24 113.2 60 81.7
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 1.7e-23 112.1 66 77.3
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.7e-23 112.1 69 76.8
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.2e-23 111.7 62 80.6
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 3.8e-23 110.9 62 79.0
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 4.9e-23 110.5 66 77.3
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 6.4e-23 110.2 69 73.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 6.4e-23 110.2 71 76.1
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.4e-23 110.2 68 76.5
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 8.4e-23 109.8 69 72.5
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.4e-23 109.8 62 80.6
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.4e-22 109.0 61 78.7
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 1.4e-22 109.0 68 72.1
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-22 109.0 65 76.9
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.4e-22 109.0 62 80.6
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 4.2e-22 107.5 64 75.0
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 5.4e-22 107.1 57 84.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 5.4e-22 107.1 74 70.3
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 5.4e-22 107.1 57 84.2
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.4e-22 107.1 66 74.2
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 5.4e-22 107.1 60 80.0
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 5.4e-22 107.1 65 73.8
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 7.1e-22 106.7 62 77.4
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 7.1e-22 106.7 62 77.4
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 7.1e-22 106.7 62 77.4
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.2e-21 105.9 69 71.0
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.2e-21 105.9 59 78.0
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.2e-21 105.9 59 78.0
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.2e-21 105.9 59 78.0
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.2e-21 105.9 66 71.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.2e-21 105.9 67 76.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 2.7e-21 104.8 66 74.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 6.0e-21 103.6 60 75.0
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.0e-20 102.8 59 78.0
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.0e-20 102.8 64 73.4
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.3e-20 102.4 57 77.2
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.8e-20 102.1 66 71.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.8e-20 102.1 61 77.0
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 2.3e-20 101.7 65 72.3
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.0e-20 101.3 60 75.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 6.7e-20 100.1 57 77.2
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 6.7e-20 100.1 53 83.0
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 8.7e-20 99.8 59 72.9
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 8.7e-20 99.8 63 71.4
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.5e-19 99.0 66 65.2
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.5e-19 99.0 58 74.1
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.9e-19 98.6 58 72.4
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 2.5e-19 98.2 57 75.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 2.5e-19 98.2 57 75.4
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 7.4e-19 96.7 59 76.3
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-18 95.9 66 65.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 1.6e-18 95.5 54 79.6
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.6e-18 95.5 46 91.3
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.6e-18 95.5 55 74.5
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.8e-18 94.7 62 69.4
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.8e-18 94.7 62 69.4
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.8e-18 94.7 62 69.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 4.8e-18 94.0 49 83.7
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.8e-18 94.0 66 65.2
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 8.1e-18 93.2 62 67.7
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-17 92.8 62 67.7
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-17 92.8 62 67.7
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-17 92.8 62 67.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-17 92.8 62 67.7
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 62 67.7
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 69 63.8
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 53 75.5
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-17 92.4 62 67.7
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-17 92.0 66 66.7
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.8e-17 92.0 62 66.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.8e-17 92.0 57 70.2
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.4e-17 91.7 53 75.5
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.4e-17 91.7 54 75.9
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.4e-17 91.7 59 71.2
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 66.1
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 67.7
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 67.7
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 67.7
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 67.7
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 67.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.1e-17 91.3 69 62.3
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.1e-17 91.3 62 66.1
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.0e-17 90.9 60 66.7
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 4.0e-17 90.9 62 66.1
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.3e-17 90.5 62 66.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 5.3e-17 90.5 62 67.7
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 6.9e-17 90.1 69 56.5
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.0e-17 89.7 59 69.5
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.2e-16 89.4 55 74.5
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.5e-16 89.0 59 66.1
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 1.5e-16 89.0 53 73.6
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.0e-16 88.6 64 64.1
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 2.0e-16 88.6 54 70.4
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.0e-16 88.6 52 76.9
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.6e-16 88.2 62 62.9
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.4e-16 87.8 55 70.9
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 3.4e-16 87.8 55 70.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 7.6e-16 86.7 63 65.1
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.9e-16 86.3 47 80.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-15 85.9 55 70.9
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-15 85.9 55 70.9
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.9e-14 82.0 46 76.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 9.3e-14 79.7 52 69.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.2e-13 79.3 46 73.9
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 2.1e-13 78.6 45 71.1
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 4.6e-13 77.4 62 59.7
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 6.0e-13 77.0 54 61.1
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.0e-13 77.0 54 64.8
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.9e-13 76.6 60 56.7
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 2.3e-12 75.1 58 62.1
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.8e-10 68.2 46 63.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 8.2e-10 66.6 45 62.2
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 2.4e-09 65.1 37 75.7
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 5.8e-08 60.5 41 61.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 5.8e-08 60.5 30 83.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 2.9e-07 58.2 62 46.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 2.9e-07 58.2 62 46.8
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.8e-07 57.8 55 47.3
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.4e-06 55.8 39 61.5
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 5.5e-06 53.9 55 43.6
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 7.1e-06 53.5 40 65.0


User provided reference genes

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