Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 9.5e-184 646.7 335 100.0
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 1.3e-180 636.3 335 99.1
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.8e-174 615.9 334 95.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 4.2e-171 604.7 328 95.4
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.9e-163 579.3 330 88.8
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 6.0e-162 574.3 328 89.3
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 7.9e-162 573.9 328 88.7
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.8e-161 572.8 328 88.4
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 2.5e-160 568.9 329 87.2
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 4.8e-159 564.7 326 88.7
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 6.2e-159 564.3 328 87.8
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-158 563.5 329 87.8
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.4e-158 563.1 329 85.7
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 3.1e-158 562.0 328 87.2
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 5.3e-158 561.2 329 85.1
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.3e-158 561.2 328 86.9
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 6.9e-158 560.8 330 85.5
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 6.9e-158 560.8 326 86.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 9.0e-158 560.5 328 86.9
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-157 559.7 329 86.9
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 2.0e-157 559.3 329 84.8
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 2.0e-157 559.3 329 87.2
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.6e-157 558.9 329 85.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 3.4e-157 558.5 329 85.7
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 3.4e-157 558.5 329 84.8
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 4.5e-157 558.1 329 85.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 5.8e-157 557.8 326 86.2
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 7.6e-157 557.4 356 80.3
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 9.9e-157 557.0 329 84.8
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.3e-156 556.6 332 84.9
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.9e-156 555.4 328 85.7
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.9e-156 555.4 328 85.7
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 2.9e-156 555.4 329 86.9
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 6.4e-156 554.3 325 86.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 6.4e-156 554.3 328 85.4
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 8.4e-156 553.9 328 84.8
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 5.5e-155 551.2 329 85.1
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 7.1e-155 550.8 328 85.1
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.1e-155 550.8 327 85.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 7.1e-155 550.8 327 85.9
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 7.1e-155 550.8 330 84.5
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.2e-154 550.1 329 84.2
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.2e-154 550.1 328 83.5
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.6e-154 549.7 329 83.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.1e-154 549.3 329 84.8
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 4.6e-154 548.1 328 84.8
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 4.6e-154 548.1 328 83.5
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 6.0e-154 547.7 329 83.0
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 7.9e-154 547.4 326 85.0
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 7.9e-154 547.4 332 83.4
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-153 545.4 328 83.5
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 6.7e-153 544.3 328 83.2
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 2.5e-152 542.3 329 83.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-152 542.0 328 82.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 4.3e-152 541.6 329 84.2
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.6e-151 539.7 328 83.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 2.8e-151 538.9 330 82.4
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.8e-151 538.9 329 83.9
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 6.2e-151 537.7 329 83.6
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 8.1e-151 537.3 330 83.0
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.4e-150 536.6 329 83.6
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 2.4e-150 535.8 329 83.0
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 4.0e-150 535.0 329 83.3
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 5.3e-150 534.6 329 83.0
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 5.3e-150 534.6 329 83.0
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 5.3e-150 534.6 329 83.0
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 9.0e-150 533.9 329 83.0
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 1.5e-149 533.1 329 83.3
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 2.6e-149 532.3 329 82.4
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 1.3e-148 530.0 365 77.0
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 3.8e-148 528.5 335 81.5
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 3.8e-148 528.5 329 80.9
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.1e-147 526.9 329 80.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 2.5e-147 525.8 329 80.2
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 2.5e-147 525.8 329 80.2
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 2.5e-147 525.8 329 80.2
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 2.5e-147 525.8 329 80.2
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.5e-147 525.8 328 80.8
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.5e-147 525.8 383 73.4
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 9.3e-147 523.9 301 88.4
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 2.7e-146 522.3 329 79.9
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 3.5e-146 521.9 329 79.9
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 3.5e-146 521.9 331 79.5
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.6e-146 521.5 329 79.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.0e-146 521.2 329 79.3
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.0e-145 520.4 331 79.2
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.8e-145 519.6 325 81.8
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 3.0e-145 518.8 329 79.3
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-145 518.5 328 79.9
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.7e-145 517.7 328 79.9
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 3.3e-144 515.4 326 81.9
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.8e-143 512.3 327 79.5
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 3.7e-143 511.9 334 78.4
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.8e-143 511.5 315 81.3
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 5.3e-142 508.1 329 78.1
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.5e-141 506.5 305 82.6
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 4.5e-141 505.0 452 61.7
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.4e-139 500.0 331 77.6
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.4e-139 500.0 330 78.5
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 4.2e-139 498.4 336 77.4
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 3.3e-136 488.8 299 84.9
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 9.7e-136 487.3 332 74.1
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 2.2e-135 486.1 335 74.0
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 3.7e-135 485.3 329 76.3
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 4.8e-135 485.0 329 77.5
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 5.3e-134 481.5 326 78.2
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 3.4e-133 478.8 333 78.1
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 2.2e-132 476.1 331 76.7
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 4.2e-131 471.9 326 73.0
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.4e-131 470.7 373 68.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 1.7e-127 459.9 329 75.1
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.5e-124 448.0 279 80.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.1e-120 437.2 327 72.8
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 2.2e-111 406.4 325 62.2
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.4e-110 402.9 319 63.6
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 7.0e-110 401.4 234 87.6
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 6.5e-108 394.8 330 62.7
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 5.2e-105 385.2 235 83.0
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 2.8e-95 352.8 315 59.7
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.4e-94 349.7 274 66.8
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.3e-92 343.2 226 77.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.9e-91 340.1 329 60.8
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 5.7e-88 328.6 198 84.8
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 5.7e-88 328.6 234 67.9
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.8e-82 309.7 335 55.2
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 6.8e-81 305.1 168 91.1
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 2.0e-80 303.5 221 74.2
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 1.1e-78 297.7 221 72.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 2.8e-74 283.1 339 44.8
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 2.8e-74 283.1 221 71.0
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.1e-73 281.2 162 87.7
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 1.8e-65 253.8 161 78.3
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.8e-65 251.9 280 56.1
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-61 240.7 329 47.7
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-58 230.3 132 84.1
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-53 213.8 130 80.8
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-40 171.4 98 82.7
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 3.2e-38 163.3 150 56.0
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 4.2e-38 162.9 161 54.7
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 9.3e-38 161.8 182 54.4
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 6.7e-36 155.6 103 77.7
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 6.2e-34 149.1 88 83.0
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 2.6e-32 143.7 87 78.2
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 2.5e-30 137.1 89 77.5
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 4.2e-30 136.3 69 89.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 4.2e-30 136.3 77 87.0
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 4.6e-29 132.9 87 80.5
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 4.3e-27 126.3 81 80.2
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 2.2e-26 124.0 74 79.7
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.5e-24 117.9 72 76.4
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.9e-24 115.9 75 74.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 1.3e-23 114.8 72 81.9
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 1.6e-21 107.8 69 76.8
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-19 101.7 63 79.4
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 2.4e-17 94.0 62 77.4
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.8e-09 67.8 85 50.6
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 3.8e-07 60.1 76 44.7
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 6.5e-07 59.3 33 81.8


User provided reference genes

Program Settings