Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 3.1e-142 508.4 259 100.0
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 4.6e-117 424.9 261 87.0
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.5e-115 419.9 266 84.2
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.2e-114 416.8 267 82.0
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 2.7e-101 372.5 270 75.2
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.7e-100 369.8 276 72.8
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 1.7e-100 369.8 221 87.3
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.7e-100 369.8 222 83.8
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.3e-100 369.4 228 82.5
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 5.1e-100 368.2 222 83.3
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.1e-99 367.1 223 83.9
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.1e-99 367.1 223 84.3
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.9e-99 366.3 255 76.9
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 4.3e-99 365.2 242 78.5
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.3e-99 365.2 272 73.2
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 9.5e-99 364.0 268 72.8
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 9.5e-99 364.0 268 72.8
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.1e-98 362.8 226 80.5
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.8e-98 362.5 225 84.4
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.8e-98 362.5 225 84.4
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.8e-98 362.5 268 72.4
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 2.8e-98 362.5 237 79.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 2.8e-98 362.5 237 79.3
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 6.2e-98 361.3 238 78.6
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 6.2e-98 361.3 247 76.9
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 8.1e-98 360.9 250 76.0
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.4e-97 360.1 223 83.0
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.1e-97 359.0 235 80.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.1e-97 359.0 268 72.8
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.0e-97 358.6 226 79.6
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 5.2e-97 358.2 204 88.7
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.8e-97 357.8 219 84.9
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 6.8e-97 357.8 225 81.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 6.8e-97 357.8 218 82.6
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 6.8e-97 357.8 242 78.1
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 8.9e-97 357.5 213 85.4
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 8.9e-97 357.5 264 73.5
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.6e-96 355.9 201 90.0
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.6e-96 355.9 245 75.9
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 3.4e-96 355.5 224 81.7
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 4.4e-96 355.1 219 83.1
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 4.4e-96 355.1 219 83.1
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 5.8e-96 354.8 272 70.2
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 9.9e-96 354.0 207 88.4
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 9.9e-96 354.0 225 80.4
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.3e-95 353.6 202 88.6
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.3e-95 353.6 224 81.2
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.7e-95 353.2 219 81.7
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 2.2e-95 352.8 197 90.4
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.2e-95 352.8 204 86.3
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.9e-95 351.7 202 87.1
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.9e-95 351.7 199 87.9
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 6.4e-95 351.3 242 75.2
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.1e-94 350.5 268 71.3
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.4e-94 350.1 242 75.2
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.4e-94 350.1 242 75.2
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.9e-94 349.7 199 86.9
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.9e-94 349.7 224 80.4
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.9e-94 349.7 274 71.2
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.4e-94 349.4 199 86.4
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 3.2e-94 349.0 248 74.6
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.2e-94 348.6 193 90.7
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 4.2e-94 348.6 193 90.7
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.4e-94 348.2 248 74.6
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 7.1e-94 347.8 230 78.3
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 7.1e-94 347.8 275 70.2
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 9.2e-94 347.4 197 91.4
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 9.2e-94 347.4 226 80.5
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 9.2e-94 347.4 193 89.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.6e-93 346.7 275 69.8
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 2.1e-93 346.3 238 76.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.7e-93 345.9 257 73.9
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.7e-93 345.9 212 84.0
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.5e-93 345.5 195 89.2
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.6e-93 345.1 251 74.1
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.6e-93 345.1 204 84.8
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 6.0e-93 344.7 202 85.1
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 6.0e-93 344.7 202 85.1
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.0e-92 344.0 232 76.7
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.3e-92 343.6 224 83.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.7e-92 343.2 195 87.7
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.7e-92 343.2 195 87.7
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 2.3e-92 342.8 254 72.8
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 2.3e-92 342.8 194 88.1
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 3.0e-92 342.4 255 73.7
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.0e-92 342.4 202 86.1
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 8.7e-92 340.9 194 88.7
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.5e-91 340.1 233 76.0
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.9e-91 339.7 223 78.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.9e-91 339.7 228 81.1
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.3e-91 339.0 202 85.1
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.3e-91 338.6 187 89.8
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 5.6e-91 338.2 202 83.7
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 9.6e-91 337.4 195 86.7
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 9.6e-91 337.4 261 70.1
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.2e-90 337.0 205 82.4
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.6e-90 336.7 195 87.2
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 2.1e-90 336.3 253 71.1
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.1e-90 336.3 232 75.4
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.8e-90 335.9 232 77.6
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 4.7e-90 335.1 213 78.9
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 8.1e-90 334.3 191 86.4
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.3e-87 327.0 187 86.6
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.3e-87 327.0 195 85.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 4.6e-85 318.5 181 87.3
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.7e-84 316.6 262 64.9
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 6.6e-84 314.7 264 64.0
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 4.3e-83 312.0 285 65.6
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 7.3e-83 311.2 187 83.4
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.6e-82 310.1 188 82.4
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 9.9e-80 300.8 340 52.9
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 2.4e-78 296.2 224 73.2
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.1e-77 293.1 202 78.7
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 3.0e-76 289.3 207 76.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 3.3e-75 285.8 167 86.2
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 6.2e-74 281.6 157 91.1
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.1e-70 268.1 154 87.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 9.3e-70 267.7 157 84.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 6.7e-68 261.5 150 87.3
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 8.2e-66 254.6 150 86.0
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.1e-65 254.2 160 77.5
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.5e-64 250.4 134 94.8
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 4.9e-63 245.4 191 67.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 8.7e-60 234.6 254 57.5
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 1.5e-59 233.8 160 70.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 2.5e-59 233.0 135 86.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 4.3e-59 232.3 191 69.1
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 3.0e-52 209.5 204 59.8
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 9.4e-46 188.0 185 58.9
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 3.8e-39 166.0 90 94.4
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 5.5e-38 162.2 89 91.0
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.4e-35 152.5 165 54.5
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.7e-35 151.4 175 49.7
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.3e-33 145.6 103 72.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.6e-29 134.0 108 64.8
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 4.5e-24 115.9 78 73.1
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.7e-23 114.0 84 67.9
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.9e-22 110.5 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 4.8e-18 95.9 141 42.6
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 5.4e-09 65.9 68 51.5
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 9.2e-09 65.1 94 43.6


User provided reference genes

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