Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 3.8e-73 278.1 142 100.0
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 1.7e-44 183.0 102 90.2
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 4.8e-44 181.4 95 96.8
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 3.8e-41 171.8 104 82.7
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 5.0e-41 171.4 104 83.7
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 4.7e-39 164.9 122 71.3
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 2.0e-34 149.4 104 68.3
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 4.5e-34 148.3 104 70.2
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 4.5e-34 148.3 139 56.1
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.3e-33 146.7 104 66.3
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 1.7e-33 146.4 104 66.3
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 2.2e-33 146.0 104 68.3
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 8.5e-33 144.1 104 67.3
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 1.1e-32 143.7 102 67.6
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.9e-32 142.9 133 57.1
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 2.5e-32 142.5 104 66.3
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.5e-32 142.5 104 67.3
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.5e-32 142.5 104 67.3
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 3.2e-32 142.1 104 64.4
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 1.2e-31 140.2 104 67.3
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 2.1e-31 139.4 104 62.5
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 2.7e-31 139.0 104 65.4
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 4.7e-31 138.3 104 63.5
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 4.7e-31 138.3 104 66.3
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 6.1e-31 137.9 104 63.5
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 8.0e-31 137.5 104 62.5
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 8.0e-31 137.5 152 50.0
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 8.0e-31 137.5 104 63.5
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 8.0e-31 137.5 104 64.4
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 8.0e-31 137.5 104 64.4
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 1.0e-30 137.1 137 54.7
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.0e-30 137.1 152 50.0
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 1.0e-30 137.1 152 50.0
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.4e-30 136.7 104 62.5
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 1.4e-30 136.7 104 63.5
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 3.0e-30 135.6 104 63.5
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 3.0e-30 135.6 104 63.5
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 3.0e-30 135.6 104 63.5
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 3.0e-30 135.6 104 61.5
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 4.0e-30 135.2 131 54.2
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 4.0e-30 135.2 102 63.7
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 4.0e-30 135.2 104 64.4
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 5.2e-30 134.8 104 63.5
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 5.2e-30 134.8 104 65.4
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 6.7e-30 134.4 115 56.5
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 6.7e-30 134.4 103 64.1
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 6.7e-30 134.4 103 63.1
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 6.7e-30 134.4 104 63.5
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 8.8e-30 134.0 122 54.9
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 8.8e-30 134.0 104 62.5
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 8.8e-30 134.0 115 58.3
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 8.8e-30 134.0 104 63.5
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 8.8e-30 134.0 104 62.5
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 1.2e-29 133.7 137 51.8
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.2e-29 133.7 104 60.6
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 1.2e-29 133.7 104 60.6
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 1.5e-29 133.3 115 56.5
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 1.5e-29 133.3 115 58.3
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 1.5e-29 133.3 115 56.5
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 1.5e-29 133.3 115 56.5
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 1.5e-29 133.3 115 58.3
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.5e-29 133.3 104 63.5
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 1.5e-29 133.3 104 62.5
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 2.0e-29 132.9 115 56.5
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 2.0e-29 132.9 104 60.6
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 2.0e-29 132.9 115 56.5
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 2.0e-29 132.9 104 60.6
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 2.6e-29 132.5 104 61.5
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 2.6e-29 132.5 115 58.3
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 2.6e-29 132.5 115 58.3
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 2.6e-29 132.5 122 54.9
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.6e-29 132.5 104 62.5
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 2.6e-29 132.5 131 53.4
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 3.3e-29 132.1 115 58.3
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 3.3e-29 132.1 104 59.6
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 3.3e-29 132.1 104 59.6
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 3.3e-29 132.1 137 51.8
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 3.3e-29 132.1 103 60.2
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 4.4e-29 131.7 136 52.2
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 4.4e-29 131.7 158 46.2
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 5.7e-29 131.3 115 55.7
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 61.5
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 62.5
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 62.5
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 58.7
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 59.6
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 5.7e-29 131.3 104 60.6
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 7.5e-29 131.0 122 54.1
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 7.5e-29 131.0 104 60.6
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 7.5e-29 131.0 104 60.6
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 7.5e-29 131.0 115 55.7
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 7.5e-29 131.0 104 62.5
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 7.5e-29 131.0 104 60.6
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 9.7e-29 130.6 104 61.5
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 9.7e-29 130.6 104 61.5
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 9.7e-29 130.6 104 58.7
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 9.7e-29 130.6 104 59.6
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 9.7e-29 130.6 104 61.5
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.3e-28 130.2 104 59.6
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 1.3e-28 130.2 104 60.6
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.3e-28 130.2 104 59.6
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.7e-28 129.8 104 61.5
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 1.7e-28 129.8 104 59.6
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 2.2e-28 129.4 137 51.8
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 2.2e-28 129.4 104 59.6
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 2.2e-28 129.4 131 50.4
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 2.2e-28 129.4 137 51.8
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 2.2e-28 129.4 104 60.6
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 2.8e-28 129.0 104 57.7
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 2.8e-28 129.0 104 58.7
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.8e-28 129.0 103 60.2
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 2.8e-28 129.0 104 58.7
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 3.7e-28 128.6 104 58.7
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 4.8e-28 128.3 104 59.6
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 4.8e-28 128.3 104 57.7
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 4.8e-28 128.3 103 59.2
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 8.2e-28 127.5 104 57.7
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 8.2e-28 127.5 104 61.5
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 2.4e-27 125.9 104 60.6
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 3.1e-27 125.6 115 50.4
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 5.3e-27 124.8 122 50.8
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 7.0e-27 124.4 104 59.6
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 9.1e-27 124.0 104 56.7
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 9.1e-27 124.0 104 58.7
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 9.1e-27 124.0 102 55.9
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 1.2e-26 123.6 115 50.4
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 1.6e-26 123.2 102 59.8
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 1.6e-26 123.2 102 59.8
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 2.0e-26 122.9 104 57.7
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 2.7e-26 122.5 122 50.8
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 1.3e-25 120.2 101 59.4
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 2.2e-25 119.4 105 53.3
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 2.2e-25 119.4 102 59.8
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 6.5e-25 117.9 104 54.8
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 8.5e-25 117.5 105 56.2
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 3.2e-24 115.5 104 52.9
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 8.0e-23 110.9 115 48.7
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 1.0e-22 110.5 104 52.9
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 2.3e-22 109.4 104 50.0
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 3.0e-22 109.0 104 51.0
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 6.8e-22 107.8 104 51.0
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 1.5e-21 106.7 93 52.7
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 3.4e-21 105.5 104 48.1
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 2.8e-20 102.4 100 49.0
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 2.3e-14 82.8 122 39.3
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 2.0e-13 79.7 119 44.5
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 3.1e-11 72.4 123 30.9
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 2.0e-10 69.7 124 36.3
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 1.3e-09 67.0 60 48.3
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 2.9e-09 65.9 77 48.1
arahy.Tifrunner.gnm1.ann1.ER9TT4 Arachis hypogaea HOM05D038369 ORTHO05D010597 6.1e-07 58.2 44 63.6
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.0e-06 57.4 102 33.3
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 1.8e-06 56.6 103 31.1
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 5.2e-06 55.1 100 33.0
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 8.9e-06 54.3 61 41.0


User provided reference genes

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