Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343111 Helianthus annuus HOM05D004462 ORTHO05D005231 2.1e-31 138.3 65 100.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 1.1e-14 82.8 43 86.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.0e-12 76.3 43 79.1
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 3.8e-12 74.3 43 72.1
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-11 72.8 43 74.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.0e-09 66.2 41 63.4
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 5.1e-09 63.9 56 57.1
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 8.7e-09 63.2 43 62.8
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-08 62.8 41 63.4
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.1e-08 62.8 43 58.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.5e-08 62.4 41 63.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.5e-08 61.6 41 61.0
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.5e-08 61.6 41 65.9
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.5e-08 61.6 41 61.0
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.3e-08 61.2 41 65.9
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 9.7e-08 59.7 41 63.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 9.7e-08 59.7 41 63.4
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 9.7e-08 59.7 43 53.5
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.3e-07 59.3 41 56.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-07 59.3 43 55.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.6e-07 58.9 41 58.5
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.2e-07 58.5 41 56.1
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.8e-07 58.2 41 58.5
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.8e-07 58.2 41 56.1
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.8e-07 58.2 41 56.1
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.7e-07 57.8 41 56.1
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 3.7e-07 57.8 41 58.5
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 3.7e-07 57.8 41 58.5
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 3.7e-07 57.8 43 51.2
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 61.0
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 58.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 58.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 58.5
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 51.2
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 58.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 4.8e-07 57.4 43 55.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 4.8e-07 57.4 41 51.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 4.8e-07 57.4 43 53.5
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 6.3e-07 57.0 41 56.1
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 6.3e-07 57.0 41 58.5
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 8.2e-07 56.6 40 52.5
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 8.2e-07 56.6 41 56.1
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 8.2e-07 56.6 41 51.2
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 8.2e-07 56.6 41 51.2
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 8.2e-07 56.6 41 51.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 8.2e-07 56.6 41 58.5
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 61.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 61.0
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 61.0
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 48.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.1e-06 56.2 39 61.5
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.1e-06 56.2 43 51.2
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 56.1
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-06 56.2 41 51.2
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.4e-06 55.8 41 51.2
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.4e-06 55.8 41 56.1
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.4e-06 55.8 41 56.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-06 55.5 41 51.2
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.8e-06 55.5 41 56.1
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.8e-06 55.5 35 62.9
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.8e-06 55.5 43 53.5
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.8e-06 55.5 43 55.8
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.4e-06 55.1 41 51.2
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.4e-06 55.1 41 58.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.4e-06 55.1 41 56.1
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.4e-06 55.1 44 47.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.1e-06 54.7 39 53.8
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.1e-06 54.7 41 53.7
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 3.1e-06 54.7 41 58.5
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 3.1e-06 54.7 39 53.8
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.1e-06 54.7 41 58.5
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.1e-06 54.3 41 56.1
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 4.1e-06 54.3 41 48.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 4.1e-06 54.3 41 53.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.1e-06 54.3 41 48.8
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.1e-06 54.3 43 53.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.1e-06 54.3 43 53.5
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 5.3e-06 53.9 41 53.7
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 5.3e-06 53.9 39 59.0
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.3e-06 53.9 41 51.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 5.3e-06 53.9 43 48.8
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 5.3e-06 53.9 43 51.2
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 5.3e-06 53.9 41 51.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 5.3e-06 53.9 41 48.8
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 6.9e-06 53.5 41 53.7
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.9e-06 53.5 41 53.7
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.9e-06 53.5 41 53.7
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 6.9e-06 53.5 41 53.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.9e-06 53.5 41 53.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.9e-06 53.5 50 48.0
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.0e-06 53.1 50 48.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 9.0e-06 53.1 43 51.2
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 9.0e-06 53.1 41 48.8


User provided reference genes

Program Settings