Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 8.3e-64 246.9 126 100.0
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.0e-58 229.9 126 89.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.4e-55 217.6 127 86.6
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.5e-52 209.5 122 86.1
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 8.9e-50 200.3 129 78.3
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.0e-49 199.1 130 78.5
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.0e-49 199.1 124 79.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.0e-49 199.1 124 82.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.4e-49 198.0 129 77.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 7.5e-49 197.2 124 82.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.7e-48 196.1 127 76.4
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.9e-48 195.3 130 76.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.7e-48 194.9 128 77.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 3.7e-48 194.9 127 78.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 3.7e-48 194.9 128 78.9
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.1e-47 193.4 128 78.1
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 75.8
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.2e-47 191.8 128 76.6
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 5.4e-47 191.0 124 76.6
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.4e-47 191.0 128 75.0
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.4e-47 191.0 128 75.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 5.4e-47 191.0 128 78.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 7.0e-47 190.7 127 81.1
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 9.2e-47 190.3 124 76.6
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.2e-46 189.9 132 73.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.5e-46 188.3 127 78.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 4.6e-46 188.0 128 74.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 4.6e-46 188.0 128 74.2
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.0e-46 187.6 128 72.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.0e-46 187.6 128 73.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.0e-46 187.6 128 73.4
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 6.0e-46 187.6 127 78.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.3e-45 186.4 124 75.0
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 78.1
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.3e-45 186.4 127 78.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.7e-45 186.0 126 75.4
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.7e-45 186.0 126 75.4
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.3e-45 185.7 130 72.3
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 76.6
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.3e-45 185.7 129 75.2
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.9e-45 184.9 125 79.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 72.7
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 5.0e-45 184.5 128 73.4
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.0e-45 184.5 121 79.3
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 5.0e-45 184.5 128 75.0
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 6.6e-45 184.1 130 73.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.6e-45 184.1 124 75.0
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 8.6e-45 183.7 128 72.7
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 72.7
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-44 183.0 134 73.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 72.7
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.5e-44 183.0 123 78.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 73.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.3e-44 181.8 126 73.0
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.3e-44 181.4 129 72.9
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.6e-44 181.0 132 73.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.6e-44 181.0 132 73.5
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 9.5e-44 180.3 134 71.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 2.1e-43 179.1 124 73.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.1e-43 179.1 124 75.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 73.8
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 72.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.8e-43 178.7 124 73.4
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.6e-43 178.3 126 74.6
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 4.7e-43 177.9 129 73.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 6.2e-43 177.6 131 72.5
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 6.2e-43 177.6 131 72.5
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 8.1e-43 177.2 127 77.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 8.1e-43 177.2 127 77.2
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 8.1e-43 177.2 114 75.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 8.1e-43 177.2 120 78.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.1e-43 177.2 131 72.5
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-42 176.8 130 71.5
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-42 176.8 130 71.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 69.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.4e-42 176.4 126 74.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.8e-42 176.0 132 72.0
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.3e-42 175.6 128 71.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 3.1e-42 175.3 131 71.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 4.0e-42 174.9 130 72.3
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.8e-42 174.1 124 73.4
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.8e-42 174.1 117 79.5
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.9e-42 173.7 133 72.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.2e-41 173.3 128 71.9
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.5e-41 172.9 109 78.9
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.5e-41 172.9 124 71.0
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-41 172.2 126 70.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.4e-41 171.8 131 71.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 4.4e-41 171.4 130 72.3
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 4.4e-41 171.4 130 72.3
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 4.4e-41 171.4 130 72.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.4e-41 171.4 109 78.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.4e-41 171.4 129 71.3
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.3e-40 169.9 126 69.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 70.2
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.2e-40 169.1 129 69.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 2.9e-40 168.7 129 69.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.7e-40 168.3 132 68.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.7e-40 168.3 129 69.8
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.7e-40 168.3 124 71.8
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.3e-40 167.2 128 70.3
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 126 71.4
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.4e-39 165.6 127 70.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.4e-39 165.6 128 68.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 5.4e-39 164.5 126 71.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 5.4e-39 164.5 110 76.4
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 7.1e-39 164.1 124 69.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 7.1e-39 164.1 104 77.9
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.6e-38 162.9 126 69.8
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.7e-38 162.2 126 69.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.5e-38 161.8 127 71.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 3.5e-38 161.8 124 68.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.5e-38 161.8 124 68.5
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.3e-37 159.8 96 79.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.3e-37 159.1 117 72.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.0e-37 158.7 128 67.2
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 5.1e-37 157.9 132 68.9
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 5.1e-37 157.9 129 71.3
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 6.6e-37 157.5 125 69.6
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 8.6e-37 157.1 127 69.3
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 8.6e-37 157.1 127 69.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.1e-36 156.8 96 78.1
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.3e-36 155.2 90 85.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 4.3e-36 154.8 125 68.0
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.2e-35 153.3 115 73.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.1e-34 150.2 114 69.3
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.4e-34 149.8 125 65.6
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-34 149.4 124 65.3
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 4.4e-33 144.8 128 66.4
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.9e-33 143.7 131 60.3
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 9.9e-33 143.7 112 66.1
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.9e-32 142.1 115 65.2
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.4e-32 141.0 124 62.1
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.6e-30 136.3 75 88.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.0e-29 133.7 83 80.7
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.1e-29 131.3 92 68.5
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.6e-29 130.6 75 81.3
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.6e-28 127.9 117 59.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.6e-27 126.3 93 67.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.4e-26 123.2 122 57.4
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.6e-25 119.0 76 80.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 1.9e-23 112.8 74 78.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 3.2e-23 112.1 122 54.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 5.4e-23 111.3 128 59.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.8e-22 107.5 109 54.1
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-21 106.3 91 60.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.6e-19 98.6 78 66.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.6e-19 98.6 76 65.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 6.2e-19 97.8 92 56.5
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.3e-18 94.7 73 65.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.3e-16 90.1 107 45.8
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-16 89.7 46 95.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.1e-14 82.8 69 63.8
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 2.7e-14 82.4 68 64.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.6e-06 56.6 58 51.7


User provided reference genes

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