Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 5.2e-227 790.8 426 100.0
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 1.1e-173 613.6 432 77.8
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 6.9e-155 551.2 395 76.7
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 8.2e-148 527.7 435 67.1
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 2.7e-143 512.7 411 70.3
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 5.5e-136 488.4 429 63.9
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.4e-131 473.8 341 74.5
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 7.0e-131 471.5 431 64.0
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.5e-129 464.5 426 63.4
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.1e-128 464.2 429 61.8
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.9e-128 463.4 423 64.1
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 7.2e-128 461.5 405 61.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.1e-127 459.9 424 62.5
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.8e-126 456.8 427 60.7
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.3e-126 456.4 420 62.4
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 6.8e-126 454.9 426 60.1
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.2e-125 454.1 426 62.4
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 3.4e-125 452.6 426 60.6
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 9.8e-125 451.1 429 62.0
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 9.8e-125 451.1 420 61.9
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.7e-124 450.3 451 59.4
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 3.7e-124 449.1 426 60.8
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.4e-123 446.4 367 66.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-123 446.4 367 66.8
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.7e-122 443.0 367 66.5
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 4.5e-122 442.2 423 60.8
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 1.3e-121 440.7 430 60.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.3e-121 439.9 456 58.1
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 8.6e-121 438.0 437 56.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.5e-120 436.4 336 69.6
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 2.5e-120 436.4 375 64.5
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.3e-120 436.0 376 64.6
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.1e-119 433.3 358 67.0
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 2.8e-119 433.0 424 59.0
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.4e-118 430.6 431 57.1
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.8e-118 430.3 427 57.1
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 2.3e-118 429.9 339 67.8
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.0e-118 429.5 383 62.1
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 3.0e-118 429.5 429 57.1
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 6.8e-118 428.3 429 58.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.0e-117 426.8 341 68.3
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 3.4e-117 426.0 401 61.1
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 4.4e-117 425.6 435 56.6
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 7.5e-117 424.9 426 58.2
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 7.5e-117 424.9 432 56.7
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.8e-117 424.5 336 68.2
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 2.4e-115 419.9 424 55.9
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.2e-114 417.5 393 62.6
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 4.5e-114 415.6 384 58.6
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 7.8e-114 414.8 374 61.8
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 7.8e-114 414.8 384 61.5
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.0e-113 414.5 341 65.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.0e-113 412.1 427 56.4
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-112 410.2 421 57.7
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 3.3e-112 409.5 374 61.0
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 9.5e-112 407.9 372 59.7
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.6e-111 406.0 424 54.2
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.1e-111 405.2 361 59.0
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 8.0e-111 404.8 477 53.7
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.0e-110 404.4 367 60.5
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 3.1e-110 402.9 343 63.0
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 4.0e-110 402.5 368 61.7
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 2.6e-109 399.8 328 64.3
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.3e-108 397.5 386 57.0
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 1.9e-107 393.7 369 59.9
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.9e-107 393.7 369 59.9
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 5.4e-107 392.1 372 59.7
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 5.4e-107 392.1 372 59.7
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 4.6e-106 389.0 373 59.8
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 5.0e-105 385.6 358 59.8
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 6.6e-105 385.2 335 61.5
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-104 383.3 413 56.7
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-103 380.9 374 60.7
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.6e-103 380.6 336 59.5
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 5.2e-102 375.6 333 57.4
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 8.3e-100 368.2 349 61.3
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 5.4e-99 365.5 331 59.8
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.5e-96 357.5 390 50.3
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.6e-96 355.5 343 53.1
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 5.6e-96 355.5 372 57.0
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 9.5e-96 354.8 324 59.6
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 2.1e-95 353.6 494 47.0
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.7e-92 344.0 288 63.9
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.4e-91 340.1 351 55.6
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 2.5e-88 330.1 328 58.2
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.8e-86 323.9 331 51.1
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.4e-83 314.3 331 56.8
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.2e-83 312.8 371 50.1
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.2e-82 311.2 400 47.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.2e-79 301.2 436 44.3
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 3.2e-75 286.6 342 52.3
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 7.8e-74 282.0 211 69.7
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 2.9e-68 263.5 217 61.8
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 3.2e-67 260.0 482 39.8
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 5.4e-67 259.2 245 62.0
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.5e-64 251.1 230 58.3
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 9.6e-64 248.4 345 43.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 3.7e-63 246.5 215 63.3
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 1.1e-62 245.0 294 53.1
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.4e-62 244.6 213 62.9
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 6.9e-62 242.3 217 61.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.9e-59 234.2 215 59.5
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 2.5e-59 233.8 327 43.1
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 1.8e-57 227.6 266 49.2
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.4e-54 218.0 425 35.3
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 5.8e-53 212.6 327 42.8
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.7e-52 211.1 240 55.0
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.3e-48 196.8 243 49.0
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 6.9e-46 189.1 189 53.4
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.5e-45 186.4 333 35.7
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 9.4e-43 178.7 235 48.1
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 8.8e-41 172.2 336 37.2
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.4e-40 169.1 351 36.2
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.7e-39 167.9 231 48.1
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.3e-36 158.3 153 57.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.7e-36 157.9 126 65.9
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 6.5e-36 156.0 189 52.9
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 8.5e-36 155.6 333 35.4
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-35 153.3 205 41.0
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 1.2e-34 151.8 348 31.0
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 2.7e-34 150.6 132 57.6
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-32 144.4 338 32.5
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 7.0e-30 136.0 128 55.5
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-29 134.4 399 30.3
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 5.9e-29 132.9 169 50.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 1.3e-28 131.7 161 47.2
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.2e-27 126.7 357 29.4
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 9.4e-27 125.6 100 62.0
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 6.1e-26 122.9 84 72.6
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 3.0e-25 120.6 102 60.8
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.2e-23 114.4 139 52.5
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.0e-22 109.4 108 53.7
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 2.0e-21 107.8 122 50.8
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.5e-21 107.1 81 71.6
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 5.0e-20 103.2 132 51.5
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 8.5e-20 102.4 71 64.8
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 5.5e-19 99.8 98 52.0
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.1e-18 97.8 66 74.2
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.7e-18 97.4 72 72.2
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.6e-18 97.1 161 39.8
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 1.8e-17 94.7 98 45.9
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.0e-17 93.6 73 72.6
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 1.5e-16 91.7 80 66.2
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 9.8e-16 89.0 100 46.0
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 3.1e-14 84.0 73 61.6
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 5.4e-14 83.2 117 43.6
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.9e-11 74.7 59 64.4
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 5.5e-11 73.2 63 60.3
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-09 68.6 55 60.0
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 2.0e-08 64.7 332 26.8
AUR62013941 Chenopodium quinoa HOM05D000943 ORTHO05D008314 4.4e-08 63.5 425 25.4
Lj3g0014038 Lotus japonicus HOM05D000943 ORTHO05D008314 4.4e-08 63.5 357 25.2
AUR62019668 Chenopodium quinoa HOM05D000943 ORTHO05D008314 5.7e-08 63.2 431 24.8
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 7.5e-08 62.8 327 26.0
Peaxi162Scf00000g76016 Petunia axillaris HOM05D000943 ORTHO05D008314 2.2e-07 61.2 413 24.9
Ah.04g163940 Amaranthus hybridus HOM05D000943 ORTHO05D008314 2.8e-07 60.8 352 24.7
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 3.7e-07 60.5 329 25.2
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 3.7e-07 60.5 240 26.7
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 4.9e-07 60.1 324 26.2
arahy.Tifrunner.gnm1.ann1.BUF90N Arachis hypogaea HOM05D000943 ORTHO05D008314 8.3e-07 59.3 323 25.4
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 8.3e-07 59.3 347 24.2
Ca_03924_v3 Cicer arietinum L. HOM05D000943 ORTHO05D008314 1.1e-06 58.9 329 25.2
Psat1g007600 Pisum sativum HOM05D000943 ORTHO05D008314 1.1e-06 58.9 323 25.7
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 1.1e-06 58.9 324 25.6
HanXRQChr10g0305601 Helianthus annuus HOM05D000943 ORTHO05D008314 1.4e-06 58.5 433 24.0
Aqoxy1G01881 Aquilegia oxysepala HOM05D000943 ORTHO05D008314 1.8e-06 58.2 328 24.1
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.4e-06 57.8 332 25.6
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.4e-06 57.8 328 24.7
VMungo1080G0956 Vigna mungo HOM05D000943 ORTHO05D008314 2.4e-06 57.8 321 24.9
FAN11G0107 Fragaria x ananassa HOM05D000943 ORTHO05D008314 3.1e-06 57.4 332 25.3
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 3.1e-06 57.4 332 25.3
Lj1A822T51 Lonicera japonica HOM05D000943 ORTHO05D008314 3.1e-06 57.4 381 23.9
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 3.1e-06 57.4 327 24.2
EL10Ac4g08437 Beta vulgaris HOM05D000943 ORTHO05D008314 4.1e-06 57.0 389 24.2
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 4.1e-06 57.0 335 24.8
Sopen12g001380 Solanum pennellii HOM05D000943 ORTHO05D008314 4.1e-06 57.0 324 25.9
THA.LOC104812302 Tarenaya hassleriana HOM05D000943 ORTHO05D008314 4.1e-06 57.0 340 25.3
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 4.1e-06 57.0 281 26.0
ATR0763G119 Amborella trichopoda HOM05D000943 ORTHO05D008314 7.0e-06 56.2 326 26.1
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 7.0e-06 56.2 335 24.2
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 7.0e-06 56.2 325 24.6
Manes.03G078100 Manihot esculenta HOM05D000943 ORTHO05D008314 7.0e-06 56.2 371 25.1
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 7.0e-06 56.2 60 46.7
TAR629G1459 Trochodendron aralioides HOM05D000943 ORTHO05D008314 7.0e-06 56.2 322 23.9
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 9.1e-06 55.8 331 23.3


User provided reference genes

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