Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 0.0e+00 1568.9 809 100.0
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.5e-299 1031.9 825 68.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 8.2e-282 973.8 829 64.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 3.7e-234 815.5 876 53.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.6e-221 773.5 854 50.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.1e-221 773.1 852 50.0
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 3.1e-212 742.7 841 50.1
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.4e-209 733.0 875 48.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 3.2e-201 706.1 763 51.6
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.0e-199 701.0 736 53.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 6.7e-199 698.4 884 46.7
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.1e-197 693.3 744 51.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.8e-196 690.3 759 51.5
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 6.0e-192 675.2 843 47.2
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.9e-191 672.5 881 46.3
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.0e-188 661.4 852 46.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.3e-186 657.5 766 47.4
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.2e-186 656.8 875 43.8
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 8.5e-186 654.8 855 46.1
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.4e-185 654.1 834 46.8
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 3.2e-185 652.9 855 45.8
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.8e-183 647.1 839 46.4
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.9e-182 643.7 734 49.9
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 5.7e-182 642.1 878 45.0
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-181 641.0 878 44.6
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 6.3e-181 638.6 857 44.8
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 8.2e-181 638.3 885 44.6
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.4e-180 637.5 843 45.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.8e-180 637.1 759 48.2
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 5.3e-180 635.6 862 43.6
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 4.5e-179 632.5 880 44.4
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.9e-179 632.1 853 44.7
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.0e-178 631.3 871 43.7
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.0e-178 629.0 892 42.8
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 8.5e-178 628.2 842 44.7
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.1e-174 617.8 878 44.0
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.4e-174 615.9 793 46.3
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 5.7e-174 615.5 868 45.2
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.3e-173 614.4 845 43.4
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-173 614.0 779 45.7
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.2e-173 613.6 868 45.0
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.8e-173 613.2 889 43.1
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 6.3e-173 612.1 782 46.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.8e-172 610.5 770 46.4
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.1e-172 608.2 836 43.8
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.6e-171 606.7 749 47.5
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 4.5e-171 605.9 865 44.3
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.5e-171 605.9 836 43.7
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 8.5e-170 601.7 836 43.4
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 6.1e-168 595.5 812 44.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.0e-167 594.7 835 42.8
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-167 593.6 751 46.5
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 5.2e-167 592.4 874 42.0
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 8.8e-167 591.7 711 47.5
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 8.8e-167 591.7 843 43.9
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.4e-166 589.3 884 43.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.4e-166 589.3 783 45.5
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 4.4e-166 589.3 853 44.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.7e-165 586.3 873 43.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.8e-165 585.9 842 43.0
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 8.2e-165 585.1 877 42.3
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 3.1e-164 583.2 840 43.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 4.1e-164 582.8 830 43.6
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 7.0e-164 582.0 710 46.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.5e-161 573.5 750 45.1
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.5e-161 573.5 842 44.5
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 9.4e-161 571.6 726 46.0
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.6e-160 570.9 760 45.3
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.7e-160 569.3 835 41.8
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 8.0e-160 568.5 634 50.3
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 4.0e-159 566.2 839 43.0
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.3e-158 563.1 795 44.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 3.3e-158 563.1 640 50.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 9.7e-158 561.6 702 46.2
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 9.7e-158 561.6 877 41.4
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 8.2e-157 558.5 716 45.7
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.1e-156 556.6 833 42.9
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 4.1e-156 556.2 716 45.5
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 7.0e-156 555.4 716 45.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-155 554.7 718 45.3
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-155 554.7 894 41.3
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-155 554.3 805 42.5
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 4.5e-155 552.7 660 48.3
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 4.5e-155 552.7 750 44.1
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.9e-155 552.4 826 43.0
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-154 551.2 637 48.4
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-154 551.2 826 42.9
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.5e-153 547.7 827 41.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 4.2e-153 546.2 678 47.8
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.7e-152 542.7 634 47.8
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.0e-150 537.3 827 38.9
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 5.7e-150 535.8 840 41.9
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.7e-149 534.3 712 44.9
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.8e-148 530.8 873 40.5
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.5e-147 526.6 621 49.0
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 7.7e-147 525.4 866 40.9
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.0e-146 525.0 713 45.0
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.9e-143 511.9 705 43.4
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.3e-141 508.1 846 39.0
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.4e-140 503.8 539 51.6
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.5e-139 499.6 599 47.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.4e-135 488.0 868 37.7
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.7e-133 479.9 881 37.9
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.1e-132 478.4 656 44.1
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.4e-132 478.0 700 40.9
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.0e-131 474.2 798 39.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.6e-120 438.0 655 42.3
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.6e-120 436.8 696 40.8
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-109 401.7 664 40.4
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-109 401.7 664 40.4
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 8.7e-106 389.0 684 39.5
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.1e-103 382.1 663 37.3
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.1e-103 380.6 453 47.5
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.8e-101 373.6 687 35.4
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.9e-100 371.3 778 35.6
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.1e-97 362.1 499 46.3
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 4.3e-97 360.1 354 54.8
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-93 348.6 445 46.3
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.2e-93 347.8 620 38.2
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.9e-93 347.4 712 34.3
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 5.4e-92 343.2 504 42.1
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.0e-91 339.7 466 44.8
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.8e-90 338.2 466 44.6
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.3e-87 326.6 652 35.9
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.3e-87 326.6 652 35.9
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.0e-82 312.4 333 51.4
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.1e-75 288.1 275 52.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-72 278.1 247 59.1
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 5.9e-70 270.0 764 30.6
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.6e-67 260.8 757 30.0
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.5e-60 238.0 797 28.6
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.0e-58 231.1 481 36.2
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.3e-56 223.4 328 39.9
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.5e-54 218.8 496 36.3
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-53 215.7 221 52.9
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 3.2e-52 211.1 366 38.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 5.2e-50 203.8 279 44.1
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.7e-38 163.3 172 50.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.7e-37 162.2 142 58.5
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.2e-37 161.8 142 55.6
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.5e-37 160.2 295 36.9
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 7.2e-36 156.8 274 39.1
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 7.2e-36 156.8 197 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 9.4e-36 156.4 321 34.9
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.2e-35 156.0 275 39.6
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.0e-34 151.4 174 47.7
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.7e-32 144.4 170 46.5
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 6.3e-32 143.7 231 39.8
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 2.7e-30 138.3 120 55.0
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.0e-29 134.0 151 46.4
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 8.6e-29 133.3 237 37.6
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.9e-28 132.1 367 31.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.5e-28 131.7 207 41.5
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 5.5e-28 130.6 120 55.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.8e-27 128.3 132 51.5
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 2.3e-26 125.2 151 50.3
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 4.4e-25 120.9 113 54.0
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 7.5e-25 120.2 113 53.1
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-22 112.5 125 48.8
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 7.8e-22 110.2 134 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.6e-21 107.1 129 44.2
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.3e-20 104.4 273 33.3
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.8e-18 99.0 90 53.3
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 5.2e-18 97.4 90 53.3
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.6e-17 95.1 84 50.0
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-17 94.7 84 50.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 3.4e-17 94.7 84 50.0
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.4e-17 94.7 84 48.8
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.4e-16 90.5 182 35.7
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 5.4e-15 87.4 84 48.8
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 3.5e-14 84.7 88 52.3
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.0e-13 80.9 58 65.5
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 8.6e-13 80.1 74 50.0
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.9e-12 79.0 74 48.6
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.9e-12 79.0 73 53.4
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.2e-11 76.3 253 32.8
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 4.7e-11 74.3 63 50.8
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.4e-10 72.8 63 50.8
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 3.1e-10 71.6 177 38.4
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 3.7e-08 64.7 104 34.6
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 4.1e-07 61.2 58 51.7
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 6.0e-06 57.4 115 39.1
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 6.0e-06 57.4 111 28.8


User provided reference genes

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