Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 9.0e-207 723.4 375 100.0
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.7e-168 596.3 391 79.8
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.4e-167 593.2 387 78.0
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 8.5e-157 557.4 443 70.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 8.6e-109 397.9 306 66.3
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 1.5e-108 397.1 302 63.9
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.6e-107 393.7 301 62.8
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 8.4e-104 381.3 305 61.3
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 2.4e-103 379.8 297 63.3
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 5.4e-103 378.6 305 61.0
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 7.1e-103 378.3 297 61.3
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 9.3e-103 377.9 300 61.3
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 9.3e-103 377.9 302 59.6
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 2.7e-102 376.3 302 59.6
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 2.7e-102 376.3 302 59.6
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 2.7e-102 376.3 302 59.3
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.3e-99 367.5 307 59.9
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.4e-98 364.0 308 58.4
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 5.8e-97 358.6 304 57.9
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 7.1e-95 351.7 293 61.1
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 7.1e-95 351.7 293 61.4
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 9.3e-95 351.3 300 58.3
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 9.3e-95 351.3 299 58.2
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 2.7e-94 349.7 285 58.9
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 3.5e-94 349.4 308 58.1
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 4.6e-94 349.0 308 56.5
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.6e-94 349.0 300 59.3
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 6.0e-94 348.6 292 61.3
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 1.7e-93 347.1 293 60.8
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.3e-93 346.7 298 58.7
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.5e-92 343.2 305 57.7
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 2.5e-92 343.2 266 62.4
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 4.3e-92 342.4 291 58.1
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 4.3e-92 342.4 288 60.4
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 1.3e-91 340.9 305 59.3
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 2.8e-91 339.7 306 54.6
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 2.8e-91 339.7 307 56.0
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 6.2e-91 338.6 299 56.2
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 8.1e-91 338.2 298 55.4
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 1.8e-90 337.0 298 57.7
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 4.0e-90 335.9 367 49.3
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.2e-89 334.3 296 56.8
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 3.4e-89 332.8 295 58.0
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.1e-87 327.8 310 54.2
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.1e-87 327.8 351 50.7
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 5.4e-87 325.5 304 53.9
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 9.3e-87 324.7 308 53.9
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.2e-86 324.3 307 54.1
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.6e-86 323.9 300 53.3
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.6e-86 323.9 354 48.9
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 3.5e-86 322.8 301 55.5
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 6.0e-86 322.0 301 53.8
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 1.3e-85 320.9 301 53.5
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 1.8e-85 320.5 304 52.3
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 3.0e-85 319.7 301 54.2
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 1.1e-84 317.8 296 54.4
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.5e-84 317.4 295 54.6
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 1.9e-84 317.0 295 54.9
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 2.5e-84 316.6 305 52.1
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.3e-84 316.2 296 54.1
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 4.3e-84 315.8 296 55.1
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 5.6e-84 315.5 296 54.4
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 5.6e-84 315.5 307 51.5
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 9.6e-84 314.7 312 51.9
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.3e-83 314.3 295 54.2
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.6e-83 313.9 286 52.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.1e-83 313.5 306 53.6
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 2.8e-83 313.2 302 53.6
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 2.8e-83 313.2 320 48.1
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 3.7e-83 312.8 317 51.1
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 8.1e-83 311.6 277 59.2
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 1.4e-82 310.8 314 49.4
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 3.1e-82 309.7 290 54.5
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 9.0e-82 308.1 289 53.3
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.5e-81 307.4 308 50.6
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.5e-81 307.4 299 52.5
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.0e-81 307.0 256 61.3
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 2.6e-81 306.6 305 51.5
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.6e-81 306.6 323 50.5
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 4.5e-81 305.8 295 52.9
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 7.6e-81 305.1 308 50.3
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 1.0e-80 304.7 295 52.9
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 1.3e-80 304.3 290 53.4
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 1.3e-80 304.3 295 52.5
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.3e-80 304.3 295 52.5
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 2.9e-80 303.1 305 51.5
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 1.1e-79 301.2 295 51.9
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.5e-79 300.1 311 50.5
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 6.0e-78 295.4 322 49.1
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.4e-76 288.5 311 50.5
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 2.1e-75 287.0 313 50.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 2.8e-75 286.6 290 51.0
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.8e-75 286.6 314 48.1
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 6.2e-75 285.4 326 49.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 6.9e-74 282.0 318 48.4
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 2.0e-73 280.4 329 48.6
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 2.6e-73 280.0 270 53.7
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 2.2e-72 276.9 335 47.8
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 2.7e-62 243.4 259 51.0
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 6.1e-62 242.3 291 46.4
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 3.1e-58 229.9 217 54.4
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 1.0e-53 214.9 193 56.0
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 4.1e-50 203.0 178 57.3
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.7e-48 197.6 245 42.0
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 9.4e-47 191.8 308 38.3
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.8e-45 187.6 324 36.7
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 2.0e-44 184.1 308 37.3
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 1.7e-43 181.0 307 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 1.6e-38 164.5 224 41.1
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.1e-38 162.5 219 40.6
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.3e-37 160.6 205 41.5
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.0e-37 159.8 227 41.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-36 158.3 200 41.5
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.5e-36 157.9 219 41.1
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 2.0e-36 157.5 244 32.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 9.8e-36 155.2 219 39.3
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.9e-32 143.7 227 33.9
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.5e-31 140.6 184 42.9
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.6e-30 137.9 211 34.6
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 9.1e-26 122.1 164 39.0
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 1.7e-24 117.9 120 49.2
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 8.6e-24 115.5 175 36.0
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 3.0e-21 107.1 81 61.7
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 1.5e-20 104.8 110 50.9
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 9.2e-18 95.5 118 43.2
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 2.9e-11 73.9 75 50.7
CAN.G1425.22 Capsicum annuum HOM05D000548 ORTHO05D001552 8.1e-06 55.8 117 34.2


User provided reference genes

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